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3BQO
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (39 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRF1 TRFH DOMAIN AND TIN2 PEPTIDE COMPLEX
Authors
:
Y. Chen, Y. Yang, M. Van Overbeek, J. R. Donigian, P. Baciu, T. De Lange, M. Lei
Date
:
20 Dec 07 (Deposition) - 19 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Trf1 Trfh Domain Dimerization Domain Tin2, Adp-Ribosylation, Alternative Splicing, Cell Cycle, Cell Division, Chromosomal Protein, Dna-Binding, Mitosis, Nucleus, Phosphoprotein, Telomere, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Chen, Y. Yang, M. Van Overbeek, J. R. Donigian, P. Baciu, T. De Lange, M. Lei
A Shared Docking Motif In Trf1 And Trf2 Used For Differential Recruitment Of Telomeric Proteins.
Science V. 319 1092 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
(7, 7)
Info
All Exons
Exon 1.6a (B:256-268 (gaps))
Exon 2.1a (A:62-107)
Exon 2.3 (A:107-139)
Exon 2.4 (A:139-179)
Exon 2.5b (A:180-208 (gaps))
Exon 2.6 (A:209-258)
Exon 2.7b (A:259-268)
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All Exon Boundaries
1: Boundary 1.5/1.6a
2: Boundary 1.6a/1.6c
3: Boundary -/2.1a
4: Boundary 2.1a/2.3
5: Boundary 2.3/2.4
6: Boundary 2.4/2.5b
7: Boundary 2.5b/2.6
8: Boundary 2.6/2.7b
9: Boundary 2.7b/2.8b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000267415
1
ENSE00001193210
chr14:
24711880-24711347
534
TINF2_HUMAN
1-64
64
0
-
-
1.2
ENST00000267415
2
ENSE00000654387
chr14:
24711200-24711096
105
TINF2_HUMAN
65-99
35
0
-
-
1.3
ENST00000267415
3
ENSE00001288582
chr14:
24710982-24710881
102
TINF2_HUMAN
100-133
34
0
-
-
1.4
ENST00000267415
4
ENSE00000586400
chr14:
24710517-24710410
108
TINF2_HUMAN
134-169
36
0
-
-
1.5
ENST00000267415
5
ENSE00000654380
chr14:
24710322-24710226
97
TINF2_HUMAN
170-202
33
0
-
-
1.6a
ENST00000267415
6a
ENSE00001288575
chr14:
24710081-24709625
457
TINF2_HUMAN
202-354
153
1
B:256-268 (gaps)
23
1.6c
ENST00000267415
6c
ENSE00001193206
chr14:
24709536-24709469
68
TINF2_HUMAN
354-377
24
0
-
-
1.6d
ENST00000267415
6d
ENSE00001193174
chr14:
24709361-24709270
92
TINF2_HUMAN
377-407
31
0
-
-
1.6e
ENST00000267415
6e
ENSE00001348153
chr14:
24709137-24708853
285
TINF2_HUMAN
408-451
44
0
-
-
2.1a
ENST00000276603
1a
ENSE00001408652
chr8:
73921099-73921440
342
TERF1_HUMAN
1-107
107
1
A:62-107
46
2.3
ENST00000276603
3
ENSE00000980813
chr8:
73926130-73926225
96
TERF1_HUMAN
107-139
33
1
A:107-139
33
2.4
ENST00000276603
4
ENSE00000980814
chr8:
73932919-73933040
122
TERF1_HUMAN
139-179
41
1
A:139-179
41
2.5b
ENST00000276603
5b
ENSE00000980815
chr8:
73934451-73934537
87
TERF1_HUMAN
180-208
29
1
A:180-208 (gaps)
29
2.6
ENST00000276603
6
ENSE00000980816
chr8:
73937057-73937206
150
TERF1_HUMAN
209-258
50
1
A:209-258
50
2.7b
ENST00000276603
7b
ENSE00000980817
chr8:
73939175-73939287
113
TERF1_HUMAN
259-296
38
1
A:259-268
10
2.8b
ENST00000276603
8b
ENSE00000980818
chr8:
73942571-73942630
60
TERF1_HUMAN
296-316
21
0
-
-
2.8d
ENST00000276603
8d
ENSE00000980819
chr8:
73944277-73944368
92
TERF1_HUMAN
316-347
32
0
-
-
2.10
ENST00000276603
10
ENSE00001087264
chr8:
73951351-73951454
104
TERF1_HUMAN
347-381
35
0
-
-
2.11a
ENST00000276603
11a
ENSE00002096154
chr8:
73958196-73958706
511
TERF1_HUMAN
382-439
58
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d3bqoa_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Telomeric repeat binding factor (TRF) dimerisation domain
(5)
Superfamily
:
Telomeric repeat binding factor (TRF) dimerisation domain
(5)
Family
:
Telomeric repeat binding factor (TRF) dimerisation domain
(5)
Protein domain
:
TRF1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d3bqoa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_3bqoA00 (A:62-268)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
Telomeric repeat binding factor (TRF) dimerisation domain
(6)
Human (Homo sapiens)
(6)
1a
3bqoA00
A:62-268
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Asym.Unit (43 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
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