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3BP1
Biol. Unit 3
Info
Asym.Unit (430 KB)
Biol.Unit 1 (421 KB)
Biol.Unit 2 (212 KB)
Biol.Unit 3 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE 7-CYANO-7-DEAZAGUANINE REDUCTASE QUEF FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR
Authors
:
Y. Kim, M. Zhou, S. Moy, A. Joachimiak, Midwest Center For Structura Genomics (Mcsg)
Date
:
18 Dec 07 (Deposition) - 08 Jan 08 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.53
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Alpha-Beta Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Kim, M. Zhou, S. Moy, J. Morales, M. A. Cunningham, A. Joachimiak
High-Resolution Structure Of The Nitrile Reductase Quef Combined With Molecular Simulations Provide Insight Into Enzyme Mechanism.
J. Mol. Biol. V. 404 127 2010
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: GUANINE (GUNa)
1b: GUANINE (GUNb)
1c: GUANINE (GUNc)
1d: GUANINE (GUNd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
4c: PHOSPHATE ION (PO4c)
4d: PHOSPHATE ION (PO4d)
4e: PHOSPHATE ION (PO4e)
4f: PHOSPHATE ION (PO4f)
5a: PYROPHOSPHATE 2- (POPa)
5b: PYROPHOSPHATE 2- (POPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GUN
2
Ligand/Ion
GUANINE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
PO4
3
Ligand/Ion
PHOSPHATE ION
5
POP
1
Ligand/Ion
PYROPHOSPHATE 2-
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC8 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC3 (SOFTWARE)
9: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:149 , HIS A:186 , HIS A:188 , HOH A:327 , HOH A:351 , HOH A:448 , PO4 C:288
BINDING SITE FOR RESIDUE PO4 A 288
2
AC2
SOFTWARE
PO4 A:288 , HOH A:351 , THR B:143 , HIS C:210 , GLN C:251 , SER C:252 , HIS C:274
BINDING SITE FOR RESIDUE PO4 C 288
3
AC3
SOFTWARE
PO4 B:288 , THR D:149 , CYS D:154 , HIS D:186 , HIS D:188 , HOH D:353 , HOH D:358 , HOH D:461 , HOH D:483
BINDING SITE FOR RESIDUE PO4 D 288
4
AC4
SOFTWARE
HIS B:210 , GLN B:251 , SER B:252 , HIS B:274 , THR C:143 , THR D:149 , PO4 D:288 , HOH D:353
BINDING SITE FOR RESIDUE PO4 B 288
5
AC5
SOFTWARE
THR C:149 , HIS C:186 , HIS C:188 , HOH C:341 , HOH C:380 , HOH C:388 , HOH C:546 , HOH C:564
BINDING SITE FOR RESIDUE PO4 C 289
6
AC8
SOFTWARE
THR D:63 , TYR D:65 , ARG D:258 , ASP D:266 , ARG D:283 , GLN D:287 , HOH D:344
BINDING SITE FOR RESIDUE MG D 289
7
BC1
SOFTWARE
TRP C:62 , LEU C:92 , ILE C:93 , GLU C:94 , SER C:95 , PHE C:232 , HIS C:233 , GLU C:234 , ILE C:267 , HOH C:530
BINDING SITE FOR RESIDUE GUN C 290
8
BC3
SOFTWARE
TRP D:62 , ILE D:93 , GLU D:94 , SER D:95 , PHE D:232 , HIS D:233 , GLU D:234 , ILE D:267 , HOH D:487
BINDING SITE FOR RESIDUE GUN D 290
9
BC5
SOFTWARE
LYS C:99 , GLN C:199 , ARG C:261 , ARG C:262 , GLY C:263 , HOH C:297 , HOH C:300 , HOH C:583 , ARG D:262 , GLY D:263
BINDING SITE FOR RESIDUE POP C 291
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3bp1B02 (B:149-287)
1b: CATH_3bp1C02 (C:149-287)
1c: CATH_3bp1D02 (D:149-287)
1d: CATH_3bp1A02 (A:149-287)
1e: CATH_3bp1A01 (A:27-144)
1f: CATH_3bp1D01 (D:27-144)
1g: CATH_3bp1B01 (B:29-144)
1h: CATH_3bp1C01 (C:29-144)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
N16961 (Vibrio cholerae o1 biovar eltor str)
(1)
1a
3bp1B02
B:149-287
1b
3bp1C02
C:149-287
1c
3bp1D02
D:149-287
1d
3bp1A02
A:149-287
1e
3bp1A01
A:27-144
1f
3bp1D01
D:27-144
1g
3bp1B01
B:29-144
1h
3bp1C01
C:29-144
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Pfam Domains
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (430 KB)
Header - Asym.Unit
Biol.Unit 1 (421 KB)
Header - Biol.Unit 1
Biol.Unit 2 (212 KB)
Header - Biol.Unit 2
Biol.Unit 3 (214 KB)
Header - Biol.Unit 3
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