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3BOR
Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DEADC DOMAIN OF HUMAN TRANSLATION INITIATION FACTOR 4A-2
Authors
:
S. Dimov, B. Hong, W. Tempel, F. Mackenzie, T. Karlberg, C. H. Arrowsmit A. M. Edwards, J. Weigelt, A. Bochkarev, H. Park, Structural Genomic Consortium (Sgc)
Date
:
17 Dec 07 (Deposition) - 01 Jan 08 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Translation Initiation, Dead Box, Structural Genomics, Helicase, Atp- Binding, Host-Virus Interaction, Hydrolase, Initiation Factor, Nucleotide-Binding, Protein Biosynthesis, Rna-Binding, Structural Genomics Consortium, Sgc
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Schutz, T. Karlberg, S. Van Den Berg, R. Collins, L. Lehtio, M. Hogbom, L. Holmberg-Schiavone, W. Tempel, H. W. Park, M. Hammarstrom, M. Moche, A. G. Thorsell, H. Schuler
Comparative Structural Analysis Of Human Dead-Box Rna Helicases.
Plos One V. 5 12791 2010
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052158 (Q93H, chain A, )
2: VAR_035838 (V181L, chain A, )
3: VAR_IF4A2_HUMAN_CCDS3282_1_01 (V181L, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052158
Q
93
H
IF4A2_HUMAN
Polymorphism
11538616
A
Q
93
H
2
UniProt
VAR_035838
V
181
L
IF4A2_HUMAN
Unclassified
---
A
V
181
L
3
CancerSNP
VAR_IF4A2_HUMAN_CCDS3282_1_01
*
V
181
L
IF4A2_HUMAN
Disease (Breast cancer)
---
A
V
181
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:33-61)
2: DEAD_ATP_HELICASE (A:181-189)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
IF4A2_HUMAN
33-61
1
A:33-61
2
DEAD_ATP_HELICASE
PS00039
DEAD-box subfamily ATP-dependent helicases signature.
IF4A2_HUMAN
181-189
1
A:181-189
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Exons
(5, 5)
Info
All Exons
Exon 1.2g (A:30-70)
Exon 1.2k (A:70-116)
Exon 1.2q (A:117-173 (gaps))
Exon 1.2v (A:173-209)
Exon 1.2z (A:210-236)
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All Exon Boundaries
1: Boundary 1.2d/1.2g
2: Boundary 1.2g/1.2k
3: Boundary 1.2k/1.2q
4: Boundary 1.2q/1.2v
5: Boundary 1.2v/1.2z
6: Boundary 1.2z/1.2ab
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000323963
1d
ENSE00001842826
chr3:
186501336-186501428
93
IF4A2_HUMAN
1-10
10
0
-
-
1.2d
ENST00000323963
2d
ENSE00001681065
chr3:
186502221-186502266
46
IF4A2_HUMAN
10-25
16
0
-
-
1.2g
ENST00000323963
2g
ENSE00001694426
chr3:
186502353-186502485
133
IF4A2_HUMAN
26-70
45
1
A:30-70
41
1.2k
ENST00000323963
2k
ENSE00001695930
chr3:
186502751-186502890
140
IF4A2_HUMAN
70-116
47
1
A:70-116
47
1.2q
ENST00000323963
2q
ENSE00001609130
chr3:
186503672-186503840
169
IF4A2_HUMAN
117-173
57
1
A:117-173 (gaps)
57
1.2v
ENST00000323963
2v
ENSE00001790780
chr3:
186503953-186504062
110
IF4A2_HUMAN
173-209
37
1
A:173-209
37
1.2z
ENST00000323963
2z
ENSE00001697839
chr3:
186504291-186504434
144
IF4A2_HUMAN
210-257
48
1
A:210-236
27
1.2ab
ENST00000323963
2ab
ENSE00001633517
chr3:
186504916-186505053
138
IF4A2_HUMAN
258-303
46
0
-
-
1.2ai
ENST00000323963
2ai
ENSE00001735148
chr3:
186505284-186505373
90
IF4A2_HUMAN
304-333
30
0
-
-
1.2am
ENST00000323963
2am
ENSE00001617255
chr3:
186505592-186505671
80
IF4A2_HUMAN
334-360
27
0
-
-
1.2ay
ENST00000323963
2ay
ENSE00001874691
chr3:
186506914-186507689
776
IF4A2_HUMAN
360-407
48
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3bora_ (A:)
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(
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3bora_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3borA00 (A:30-236)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3borA00
A:30-236
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (38 KB)
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