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3BMW
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
CYCLODEXTRIN GLYCOSYL TRANSFERASE FROM THERMOANEROBACTERIUM THERMOSULFURIGENES EM1 MUTANT S77P COMPLEXED WITH A MALTOHEPTAOSE INHIBITOR
Authors
:
H. J. Rozeboom, N. Van Oosterwijk, B. W. Dijkstra
Date
:
13 Dec 07 (Deposition) - 27 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosidase, Thermostable, Family 13 Glycosyl Hydrolas, Ligand, Substrate, Acarbose, Glycosyltransferase, Metal-Binding, Secreted, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Kelly, H. Leemhuis, H. J. Rozeboom, N. Van Oosterwijk, B. W. Dijkstra, L. Dijkhuizen
Elimination Of Competing Hydrolysis And Coupling Side Reactions Of A Cyclodextrin Glucanotransferase By Directed Evolution.
Biochem. J. V. 413 517 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(7, 21)
Info
All Hetero Components
1a: 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4... (ACIa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
4a: 6-DEOXY-ALPHA-D-GLUCOSE (G6Da)
5a: ALPHA-D-GLUCOSE (GLCa)
5b: ALPHA-D-GLUCOSE (GLCb)
5c: ALPHA-D-GLUCOSE (GLCc)
5d: ALPHA-D-GLUCOSE (GLCd)
5e: ALPHA-D-GLUCOSE (GLCe)
5f: ALPHA-D-GLUCOSE (GLCf)
5g: ALPHA-D-GLUCOSE (GLCg)
6a: GLYCEROL (GOLa)
6b: GLYCEROL (GOLb)
6c: GLYCEROL (GOLc)
6d: GLYCEROL (GOLd)
6e: GLYCEROL (GOLe)
6f: GLYCEROL (GOLf)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACI
1
Ligand/Ion
6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL
2
CA
2
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
G6D
1
Ligand/Ion
6-DEOXY-ALPHA-D-GLUCOSE
5
GLC
7
Ligand/Ion
ALPHA-D-GLUCOSE
6
GOL
6
Ligand/Ion
GLYCEROL
7
SO4
3
Ligand/Ion
SULFATE ION
[
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]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:413 , ILE A:414 , THR A:445 , HOH A:1238 , HOH A:1306 , HOH A:1326 , HOH A:1541
BINDING SITE FOR RESIDUE GLC A 687
02
AC2
SOFTWARE
GLN A:411 , ARG A:412 , GLY A:446 , HOH A:844 , HOH A:1332 , HOH A:1442 , HOH A:1600 , HOH A:1768
BINDING SITE FOR RESIDUE GLC A 688
03
AC3
SOFTWARE
GLY A:262 , GLU A:265 , HOH A:1272 , HOH A:1275 , HOH A:1305 , HOH A:1401 , HOH A:1564 , HOH A:1586 , HOH A:1652
BINDING SITE FOR RESIDUE GLC A 691
04
AC4
SOFTWARE
PHE A:184 , PHE A:196 , LYS A:233 , HOH A:1305 , HOH A:1586
BINDING SITE FOR RESIDUE GLC A 692
05
AC5
SOFTWARE
PHE A:196 , ALA A:231 , LYS A:233 , HIS A:234 , GLU A:258 , ASP A:329 , HOH A:770
BINDING SITE FOR RESIDUE G6D A 693
06
AC6
SOFTWARE
TYR A:101 , HIS A:141 , ARG A:228 , ASP A:230 , GLU A:258 , HIS A:328 , ASP A:329 , ARG A:375
BINDING SITE FOR RESIDUE ACI A 694
07
AC7
SOFTWARE
TYR A:101 , TRP A:102 , ASP A:371 , ARG A:375 , HOH A:736
BINDING SITE FOR RESIDUE GLC A 695
08
AC8
SOFTWARE
LYS A:47 , PHE A:196 , ASP A:371 , HOH A:976 , HOH A:1217 , HOH A:1357 , HOH A:1660 , HOH A:1665
BINDING SITE FOR RESIDUE GLC A 696
09
AC9
SOFTWARE
HOH A:1066 , HOH A:1278 , HOH A:1357 , HOH A:1760
BINDING SITE FOR RESIDUE GLC A 697
10
BC1
SOFTWARE
ASN A:140 , ILE A:191 , ASP A:200 , HIS A:234 , HOH A:734 , HOH A:808 , HOH A:834
BINDING SITE FOR RESIDUE CA A 698
11
BC2
SOFTWARE
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:857
BINDING SITE FOR RESIDUE CA A 699
12
BC3
SOFTWARE
ARG A:104 , GLU A:154 , ARG A:157 , HOH A:948 , HOH A:1052 , HOH A:1523
BINDING SITE FOR RESIDUE SO4 A 701
13
BC4
SOFTWARE
HIS A:665 , THR A:666 , HOH A:788 , HOH A:1057 , HOH A:1183
BINDING SITE FOR RESIDUE SO4 A 702
14
BC5
SOFTWARE
TYR A:492 , SER A:494 , SER A:495 , SER A:496 , HOH A:1490
BINDING SITE FOR RESIDUE SO4 A 703
15
BC6
SOFTWARE
PRO A:144 , TYR A:152 , ASP A:197 , HOH A:760 , HOH A:1195 , HOH A:1665
BINDING SITE FOR RESIDUE GOL A 704
16
BC7
SOFTWARE
HIS A:127 , ALA A:128 , ASN A:130 , LYS A:648 , TRP A:659 , HOH A:1271 , HOH A:1313 , HOH A:1445 , HOH A:1614
BINDING SITE FOR RESIDUE GOL A 705
17
BC8
SOFTWARE
TYR A:187 , ILE A:191 , TYR A:192 , PRO A:236 , PHE A:237 , GLY A:238 , PHE A:623 , TYR A:635 , ASP A:636
BINDING SITE FOR RESIDUE GOL A 706
18
BC9
SOFTWARE
ARG A:295 , ASP A:296 , ASN A:335 , THR A:595 , GLU A:599 , TYR A:630 , HOH A:1009 , HOH A:1028 , HOH A:1039 , HOH A:1192
BINDING SITE FOR RESIDUE GOL A 707
19
CC1
SOFTWARE
SER A:441 , TYR A:442 , ASN A:443 , ILE A:678 , HOH A:799 , HOH A:965 , HOH A:981 , HOH A:1722
BINDING SITE FOR RESIDUE GOL A 708
20
CC2
SOFTWARE
ARG A:193 , ASN A:297 , ASP A:299 , ARG A:436 , GLN A:625 , HOH A:1279 , HOH A:1775
BINDING SITE FOR RESIDUE GOL A 709
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CBM20 (A:578-683)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBM20
PS51166
CBM20 (carbohydrate binding type-20) domain profile.
CDGT_THETU
605-710
1
A:578-683
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d3bmwa3 (A:407-495)
2a: SCOP_d3bmwa1 (A:496-578)
3a: SCOP_d3bmwa2 (A:579-683)
4a: SCOP_d3bmwa4 (A:1-406)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
(4)
1a
d3bmwa3
A:407-495
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Cyclomaltodextrin glycanotransferase, domain D
(49)
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
(4)
2a
d3bmwa1
A:496-578
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
Cyclodextrin glycosyltransferase, C-terminal domain
(51)
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
(4)
3a
d3bmwa2
A:579-683
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
(4)
4a
d3bmwa4
A:1-406
[
close SCOP info
]
CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_3bmwA01 (A:1-400)
2a: CATH_3bmwA02 (A:401-495)
3a: CATH_3bmwA04 (A:580-682)
3b: CATH_3bmwA03 (A:496-579)
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)
(
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Thermoanaerobacterium thermosulfurigenes. Organism_taxid: 33950. Strain: em1.
(3)
1a
3bmwA01
A:1-400
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Thermoanaerobacterium thermosulfurigenes. Organism_taxid: 33950. Strain: em1.
(3)
2a
3bmwA02
A:401-495
Homologous Superfamily
:
Immunoglobulins
(2282)
Thermoanaerobacterium thermosulfurigenes. Organism_taxid: 33950. Strain: em1.
(3)
3a
3bmwA04
A:580-682
3b
3bmwA03
A:496-579
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (142 KB)
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