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3BLV
Asym. Unit
Info
Asym.Unit (434 KB)
Biol.Unit 1 (423 KB)
Biol.Unit 2 (215 KB)
Biol.Unit 3 (217 KB)
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(1)
Title
:
YEAST ISOCITRATE DEHYDROGENASE WITH CITRATE BOUND IN THE REGULATORY SUBUNITS
Authors
:
A. B. Taylor, G. Hu, P. J. Hart, L. Mcalister-Henn
Date
:
11 Dec 07 (Deposition) - 05 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: E,F,G,H (1x)
Keywords
:
Tca Cycle, Oxidative Metabolism, Allostery, Dehydrogenase, Decarboxylase, Allosteric Enzyme, Magnesium, Manganese, Metal-Binding, Mitochondrion, Nad, Oxidoreductase, Rna- Binding, Transit Peptide, Tricarboxylic Acid Cycle, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. B. Taylor, G. Hu, P. J. Hart, L. Mcalister-Henn
Allosteric Motions In Structures Of Yeast Nad+-Specific Isocitrate Dehydrogenase.
J. Biol. Chem. V. 283 10872 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 44)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
1b: CITRATE ANION (FLCb)
1c: CITRATE ANION (FLCc)
1d: CITRATE ANION (FLCd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FLC
4
Ligand/Ion
CITRATE ANION
2
MSE
40
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:83 , SER A:92 , ASN A:94 , ARG A:98 , ARG A:129 , PHE A:136 , THR A:241 , ARG A:274 , LYS B:189
BINDING SITE FOR RESIDUE FLC A 1001
2
AC2
SOFTWARE
THR C:83 , SER C:92 , VAL C:95 , ARG C:98 , ARG C:129 , PHE C:136 , THR C:241 , ARG C:274 , LYS D:189
BINDING SITE FOR RESIDUE FLC C 1002
3
AC3
SOFTWARE
THR E:83 , SER E:92 , ASN E:94 , ARG E:98 , ARG E:129 , PHE E:136 , THR E:241 , ARG E:274 , LYS F:189
BINDING SITE FOR RESIDUE FLC E 1003
4
AC4
SOFTWARE
THR G:83 , SER G:92 , ASN G:94 , ARG G:98 , ARG G:129 , PHE G:136 , THR G:241 , ARG G:274 , LYS H:189 , THR H:191
BINDING SITE FOR RESIDUE FLC G 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: IDH_IMDH (A:237-256,C:237-256,E:237-256,G:23...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IDH_IMDH
PS00470
Isocitrate and isopropylmalate dehydrogenases signature.
IDH1_YEAST
248-267
4
A:237-256
C:237-256
E:237-256
G:237-256
IDH2_YEAST
259-279
4
B:244-264
D:244-264
F:244-264
H:244-264
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Exons
(2, 8)
Info
All Exons
Exon 1.1 (A:14-349 (gaps) | C:1-349 (gaps) |...)
Exon 2.1 (B:4-354 (gaps) | D:4-354 (gaps) | ...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL037C
1
YNL037C.1
XIV:559004-557922
1083
IDH1_YEAST
1-360
360
4
A:14-349 (gaps)
C:1-349 (gaps)
E:1-349 (gaps)
G:14-349 (gaps)
336
349
349
336
2.1
YOR136W
1
YOR136W.1
XV:580251-581360
1110
IDH2_YEAST
1-369
369
4
B:4-354 (gaps)
D:4-354 (gaps)
F:4-354 (gaps)
H:4-354 (gaps)
351
351
351
351
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (434 KB)
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