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3BL9
Biol. Unit 1
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Asym.Unit (112 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
SYNTHETIC GENE ENCODED DCPS BOUND TO INHIBITOR DG157493
Authors
:
B. L. Staker, J. Christensen, L. Stewart, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D)
Date
:
10 Dec 07 (Deposition) - 21 Oct 08 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Mrna Decapping Enzyme, Dcps, Ligand Complex, Cytoplasm, Hydrolase, Nonsense-Mediated Mrna Decay, Nucleus, Polymorphism, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Singh, M. Salcius, S. W. Liu, B. L. Staker, R. Mishra, J. Thurmond, G. Michaud, D. R. Mattoon, J. Printen, J. Christensen, J. M. Bjornsson, B. A. Pollok, M. Kiledjian, L. Stewart, J. Jarecki, M. E. Gurney
Dcps As A Therapeutic Target For Spinal Muscular Atrophy.
Acs Chem. Biol. V. 3 711 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 5-{[1-(2,3-DICHLOROBENZYL)PIPERIDI... (DD2a)
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No.
Name
Count
Type
Full Name
1
DD2
1
Ligand/Ion
5-{[1-(2,3-DICHLOROBENZYL)PIPERIDIN-4-YL]METHOXY}QUINAZOLINE-2,4-DIAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:54 , PHE A:63 , LYS A:142 , TYR A:143 , TRP A:175 , GLU A:185 , ARG A:188 , PRO A:204 , ASP A:205 , LEU A:206 , HOH A:956 , HOH A:965 , TYR B:113
BINDING SITE FOR RESIDUE DD2 A 901
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_073956 (T316M, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_073956
T
316
M
DCPS_HUMAN
Disease (ARS)
137941190
A/B
T
316
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HIT_1 (A:264-282,B:264-282)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HIT_1
PS00892
HIT domain signature.
DCPS_HUMAN
264-282
2
A:264-282
B:264-282
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Exons
(0, 0)
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3bl9a1 (A:146-334)
1b: SCOP_d3bl9b1 (B:146-336)
2a: SCOP_d3bl9a2 (A:42-145)
2b: SCOP_d3bl9b2 (B:40-145)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
HIT-like
(73)
Superfamily
:
HIT-like
(67)
Family
:
mRNA decapping enzyme DcpS C-terminal domain
(8)
Protein domain
:
mRNA decapping enzyme DcpS C-terminal domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3bl9a1
A:146-334
1b
d3bl9b1
B:146-336
Fold
:
mRNA decapping enzyme DcpS N-terminal domain
(8)
Superfamily
:
mRNA decapping enzyme DcpS N-terminal domain
(8)
Family
:
mRNA decapping enzyme DcpS N-terminal domain
(6)
Protein domain
:
mRNA decapping enzyme DcpS N-terminal domain
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d3bl9a2
A:42-145
2b
d3bl9b2
B:40-145
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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