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3BKN
Biol. Unit 1
Info
Asym.Unit (337 KB)
Biol.Unit 1 (639 KB)
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(1)
Title
:
THE STRUCTURE OF MYCOBACTERIAL BACTERIOFERRITIN
Authors
:
R. Janowski, T. Auerbach-Nevo, M. S. Weiss
Date
:
07 Dec 07 (Deposition) - 22 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.72
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Bacterioferritin, Cytochrom B1, Mycobacterium Smegmatis, Heme, Iron, Iron Storage, Metal-Binding, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Janowski, T. Auerbach-Nevo, M. S. Weiss
Bacterioferritin From Mycobacterium Smegmatis Contains Zinc In Its Di-Nuclear Site.
Protein Sci. V. 17 1138 2008
[
close entry info
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
4n: ZINC ION (ZNn)
4o: ZINC ION (ZNo)
4p: ZINC ION (ZNp)
4q: ZINC ION (ZNq)
4r: ZINC ION (ZNr)
4s: ZINC ION (ZNs)
4t: ZINC ION (ZNt)
4u: ZINC ION (ZNu)
4v: ZINC ION (ZNv)
4w: ZINC ION (ZNw)
4x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
HEM
14
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:18 , GLU A:51 , HIS A:54 , GLU A:127
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
GLU A:51 , GLU A:94 , GLU A:127 , HIS A:130
BINDING SITE FOR RESIDUE ZN A 202
03
AC3
SOFTWARE
ASN C:34 , ASP D:66
BINDING SITE FOR RESIDUE MG C 401
04
AC4
SOFTWARE
GLU B:18 , GLU B:51 , HIS B:54 , GLU B:127
BINDING SITE FOR RESIDUE ZN B 201
05
AC5
SOFTWARE
GLU B:51 , GLU B:94 , GLU B:127 , HIS B:130
BINDING SITE FOR RESIDUE ZN B 202
06
AC6
SOFTWARE
ASP E:66
BINDING SITE FOR RESIDUE MG B 401
07
AC7
SOFTWARE
GLU C:18 , GLU C:51 , HIS C:54 , GLU C:127
BINDING SITE FOR RESIDUE ZN C 201
08
AC8
SOFTWARE
GLU C:51 , GLU C:94 , GLU C:127 , HIS C:130
BINDING SITE FOR RESIDUE ZN C 202
09
AC9
SOFTWARE
ASP C:132 , ASN I:34 , ASP J:66
BINDING SITE FOR RESIDUE MG J 401
10
BC1
SOFTWARE
GLU D:18 , GLU D:51 , HIS D:54 , GLU D:127
BINDING SITE FOR RESIDUE ZN D 201
11
BC2
SOFTWARE
GLU D:51 , GLU D:94 , GLU D:127 , HIS D:130
BINDING SITE FOR RESIDUE ZN D 202
12
BC3
SOFTWARE
ASP K:66
BINDING SITE FOR RESIDUE MG K 401
13
BC4
SOFTWARE
GLU E:18 , GLU E:51 , HIS E:54 , GLU E:127
BINDING SITE FOR RESIDUE ZN E 201
14
BC5
SOFTWARE
GLU E:51 , GLU E:94 , GLU E:127 , HIS E:130
BINDING SITE FOR RESIDUE ZN E 202
15
BC6
SOFTWARE
ASP E:132 , ASP G:66 , ASN H:34
BINDING SITE FOR RESIDUE MG E 401
16
BC7
SOFTWARE
GLU F:18 , GLU F:51 , HIS F:54 , GLU F:127
BINDING SITE FOR RESIDUE ZN F 201
17
BC8
SOFTWARE
GLU F:51 , GLU F:94 , GLU F:127 , HIS F:130
BINDING SITE FOR RESIDUE ZN F 202
18
BC9
SOFTWARE
ASP C:66 , ASN D:34
BINDING SITE FOR RESIDUE MG C 402
19
CC1
SOFTWARE
GLU G:18 , GLU G:51 , HIS G:54 , GLU G:127
BINDING SITE FOR RESIDUE ZN G 201
20
CC2
SOFTWARE
GLU G:51 , GLU G:94 , GLU G:127 , HIS G:130
BINDING SITE FOR RESIDUE ZN G 202
21
CC3
SOFTWARE
ASP B:66
BINDING SITE FOR RESIDUE MG B 402
22
CC4
SOFTWARE
GLU H:18 , GLU H:51 , HIS H:54 , GLU H:127
BINDING SITE FOR RESIDUE ZN H 201
23
CC5
SOFTWARE
GLU H:51 , GLU H:94 , GLU H:127 , HIS H:130
BINDING SITE FOR RESIDUE ZN H 202
24
CC6
SOFTWARE
ASP L:66
BINDING SITE FOR RESIDUE MG L 401
25
CC7
SOFTWARE
GLU I:18 , GLU I:51 , HIS I:54 , GLU I:127
BINDING SITE FOR RESIDUE ZN I 201
26
CC8
SOFTWARE
GLU I:51 , GLU I:94 , GLU I:127 , HIS I:130
BINDING SITE FOR RESIDUE ZN I 202
27
CC9
SOFTWARE
ASP H:66
BINDING SITE FOR RESIDUE MG H 401
28
DC1
SOFTWARE
GLU J:18 , GLU J:51 , HIS J:54 , GLU J:127
BINDING SITE FOR RESIDUE ZN J 201
29
DC2
SOFTWARE
GLU J:51 , GLU J:94 , GLU J:127 , HIS J:130
BINDING SITE FOR RESIDUE ZN J 202
30
DC3
SOFTWARE
ASN E:34 , ASP J:132
BINDING SITE FOR RESIDUE MG F 401
31
DC4
SOFTWARE
GLU K:18 , GLU K:51 , HIS K:54 , GLU K:127
BINDING SITE FOR RESIDUE ZN K 201
32
DC5
SOFTWARE
GLU K:51 , GLU K:94 , GLU K:127 , HIS K:130
BINDING SITE FOR RESIDUE ZN K 202
33
DC6
SOFTWARE
ASP A:66 , ASN B:34
BINDING SITE FOR RESIDUE MG A 401
34
DC7
SOFTWARE
GLU L:18 , GLU L:51 , HIS L:54 , GLU L:127
BINDING SITE FOR RESIDUE ZN L 201
35
DC8
SOFTWARE
GLU L:51 , GLU L:94 , GLU L:127 , HIS L:130
BINDING SITE FOR RESIDUE ZN L 202
36
DC9
SOFTWARE
ASP I:66 , ASP L:132
BINDING SITE FOR RESIDUE MG I 401
37
EC1
SOFTWARE
LEU A:19 , ILE A:22 , ASN A:23 , PHE A:26 , ARG A:45 , PHE A:49 , MET A:52 , GLU A:56 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , PHE B:49 , MET B:52 , ARG B:53 , ALA B:55 , GLU B:56
BINDING SITE FOR RESIDUE HEM B 301
38
EC2
SOFTWARE
LEU C:19 , ILE C:22 , ASN C:23 , PHE C:26 , ARG C:45 , PHE C:49 , MET C:52 , ARG C:53 , ALA C:55 , GLU C:56 , TYR C:71 , LEU D:19 , ASN D:23 , PHE D:26 , ARG D:45 , PHE D:49 , MET D:52 , ARG D:53 , ALA D:55 , GLU D:56 , TYR D:71
BINDING SITE FOR RESIDUE HEM C 301
39
EC3
SOFTWARE
LEU E:19 , ASN E:23 , PHE E:26 , ARG E:45 , PHE E:49 , MET E:52 , ALA E:55 , GLU E:56 , TYR E:71 , LEU F:19 , ASN F:23 , PHE F:26 , ARG F:45 , PHE F:49 , MET F:52 , ARG F:53 , ALA F:55 , GLU F:56 , TYR F:71
BINDING SITE FOR RESIDUE HEM E 301
40
EC4
SOFTWARE
LEU G:19 , ILE G:22 , ASN G:23 , PHE G:26 , ARG G:45 , PHE G:49 , MET G:52 , ARG G:53 , GLU G:56 , TYR G:71 , LEU H:19 , ILE H:22 , ASN H:23 , PHE H:26 , PHE H:49 , MET H:52 , ARG H:53 , ALA H:55 , GLU H:56 , TYR H:71
BINDING SITE FOR RESIDUE HEM H 301
41
EC5
SOFTWARE
LEU I:19 , ASN I:23 , PHE I:26 , ARG I:45 , PHE I:49 , MET I:52 , ARG I:53 , ALA I:55 , GLU I:56 , TYR I:71 , LEU J:19 , ASN J:23 , PHE J:26 , ARG J:45 , PHE J:49 , MET J:52 , ARG J:53 , ALA J:55 , GLU J:56 , TYR J:71
BINDING SITE FOR RESIDUE HEM I 301
42
EC6
SOFTWARE
LEU K:19 , ILE K:22 , ASN K:23 , PHE K:49 , MET K:52 , ARG K:53 , ALA K:55 , GLU K:56 , TYR K:71
BINDING SITE FOR RESIDUE HEM K 301
43
EC7
SOFTWARE
LEU L:19 , ILE L:22 , ASN L:23 , PHE L:26 , ARG L:45 , PHE L:49 , MET L:52 , ARG L:53 , ALA L:55 , GLU L:56
BINDING SITE FOR RESIDUE HEM L 301
44
EC8
SOFTWARE
ARG D:84 , ASP D:142 , GLU J:13 , PHE J:75 , SER J:76 , ARG J:78 , GLU J:96
BINDING SITE FOR RESIDUE EPE J 501
45
EC9
SOFTWARE
GLU D:13 , PHE D:75 , SER D:76 , GLU D:96 , ARG D:100 , ARG J:84 , ASP J:142
BINDING SITE FOR RESIDUE EPE D 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3bkna_ (A:)
1b: SCOP_d3bknb_ (B:)
1c: SCOP_d3bknc_ (C:)
1d: SCOP_d3bknd_ (D:)
1e: SCOP_d3bkne_ (E:)
1f: SCOP_d3bknf_ (F:)
1g: SCOP_d3bkng_ (G:)
1h: SCOP_d3bknh_ (H:)
1i: SCOP_d3bkni_ (I:)
1j: SCOP_d3bknj_ (J:)
1k: SCOP_d3bknk_ (K:)
1l: SCOP_d3bknl_ (L:)
View:
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Classes
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(
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Folds
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Superfamilies
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(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Mycobacterium smegmatis [TaxId: 246196]
(6)
1a
d3bkna_
A:
1b
d3bknb_
B:
1c
d3bknc_
C:
1d
d3bknd_
D:
1e
d3bkne_
E:
1f
d3bknf_
F:
1g
d3bkng_
G:
1h
d3bknh_
H:
1i
d3bkni_
I:
1j
d3bknj_
J:
1k
d3bknk_
K:
1l
d3bknl_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3bknA00 (A:1-161)
1b: CATH_3bknB00 (B:1-161)
1c: CATH_3bknK00 (K:1-161)
1d: CATH_3bknL00 (L:1-161)
1e: CATH_3bknC00 (C:1-161)
1f: CATH_3bknD00 (D:1-161)
1g: CATH_3bknE00 (E:1-161)
1h: CATH_3bknF00 (F:1-161)
1i: CATH_3bknG00 (G:1-161)
1j: CATH_3bknH00 (H:1-161)
1k: CATH_3bknI00 (I:1-161)
1l: CATH_3bknJ00 (J:1-161)
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Architectures
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Mc2 155 (Mycobacterium smegmatis str)
(1)
1a
3bknA00
A:1-161
1b
3bknB00
B:1-161
1c
3bknK00
K:1-161
1d
3bknL00
L:1-161
1e
3bknC00
C:1-161
1f
3bknD00
D:1-161
1g
3bknE00
E:1-161
1h
3bknF00
F:1-161
1i
3bknG00
G:1-161
1j
3bknH00
H:1-161
1k
3bknI00
I:1-161
1l
3bknJ00
J:1-161
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (337 KB)
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