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3BJI
Biol. Unit 1
Info
Asym.Unit (178 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
STRUCTURAL BASIS OF PROMISCUOUS GUANINE NUCLEOTIDE EXCHANGE BY THE T-CELL ESSENTIAL VAV1
Authors
:
J. E. Chrencik, A. Brooun, P. Kuhn, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D)
Date
:
04 Dec 07 (Deposition) - 15 Jul 08 (Release) - 01 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Protein-Protein Interaction, Gef/Gtpase, Atypical Cysteine Rich Domain, Guanine-Nucleotide Releasing Factor, Metal- Binding, Phorbol-Ester Binding, Phosphoprotein, Proto- Oncogene, Sh2 Domain, Sh3 Domain, Zinc, Zinc-Finger, Adp- Ribosylation, Alternative Splicing, Gtp-Binding, Lipoprotein, Membrane, Methylation, Nucleotide-Binding, Polymorphism, Prenylation, Signaling Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Chrencik, A. Brooun, H. Zhang, I. I. Mathews, G. L. Hura, S. A. Foster, J. J. Perry, M. Streiff, P. Ramage, H. Widmer, G. M. Bokoch, J. A. Tainer, G. Weckbecker, P. Kuhn
Structural Basis Of Guanine Nucleotide Exchange Mediated By The T-Cell Essential Vav1.
J. Mol. Biol. V. 380 828 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:529 , CYS A:532 , HIS A:554 , CYS A:557
BINDING SITE FOR RESIDUE ZN A 1
2
AC4
SOFTWARE
HIS A:516 , CYS A:546 , CYS A:549 , CYS A:564
BINDING SITE FOR RESIDUE ZN A 4
[
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_014540 (N26D, chain D, )
02: VAR_014541 (F28L, chain D, )
03: VAR_014542 (A59T, chain D, )
04: VAR_014543 (D63G, chain D, )
05: VAR_014545 (V93G, chain D, )
06: VAR_014544 (V93I, chain D, )
07: VAR_014546 (T108I, chain D, )
08: VAR_014547 (K130R, chain D, )
09: VAR_014548 (K133E, chain D, )
10: VAR_033303 (T135I, chain D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
D
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
D
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
D
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
D
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
D
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
D
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
D
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
D
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
D
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
D
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
2: DH_2 (A:194-373)
3: DH_1 (A:322-347)
4: PH_DOMAIN (A:402-504)
5: ZF_DAG_PE_2 (A:515-564)
6: ZF_DAG_PE_1 (A:516-564)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
0
-
2
DH_2
PS50010
Dbl homology (DH) domain profile.
VAV_HUMAN
194-373
1
A:194-373
-
3
DH_1
PS00741
Dbl homology (DH) domain signature.
VAV_HUMAN
322-347
1
A:322-347
-
4
PH_DOMAIN
PS50003
PH domain profile.
VAV_HUMAN
402-504
1
A:402-504
-
5
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
VAV_HUMAN
515-564
1
A:515-564
-
6
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
VAV_HUMAN
516-564
1
A:516-564
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3bjic_ (C:)
1b: SCOP_d3bjid_ (D:)
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Classes
(
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(
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d3bjic_
C:
1b
d3bjid_
D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3bjiC00 (C:1-177)
1b: CATH_3bjiD00 (D:3-176)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3bjiC00
C:1-177
1b
3bjiD00
D:3-176
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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