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3BJ4
Asym. Unit
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Asym.Unit (20 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
THE KCNQ1 (KV7.1) C-TERMINUS, A MULTI-TIERED SCAFFOLD FOR SUBUNIT ASSEMBLY AND PROTEIN INTERACTION
Authors
:
R. Wiener, J. A. Hirsch
Date
:
03 Dec 07 (Deposition) - 15 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Coiled Coil, Alternative Splicing, Deafness, Disease Mutation, Glycoprotein, Ion Transport, Ionic Channel, Long Qt Syndrome, Membrane, Phosphoprotein, Polymorphism, Potassium, Potassium Channel, Potassium Transport, Short Qt Syndrome, Transmembrane, Transport, Voltage-Gated Channel, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Wiener, Y. Haitin, L. Shamgar, M. C. Fernandez-Alonso, A. Martos, O. Chomsky-Hecht, G. Rivas, B. Attali, J. A. Hirsch
The Kcnq1 (Kv7. 1) Cooh Terminus, A Multitiered Scaffold For Subunit Assembly And Protein Interaction.
J. Biol. Chem. V. 283 5815 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
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Label:
No.
Name
Count
Type
Full Name
1
NI
1
Ligand/Ion
NICKEL (II) ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:620 , HIS B:620 , HOH B:632
BINDING SITE FOR RESIDUE NI A 1
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_008951 (T587M, chain A/B, )
2: VAR_008952 (G589D, chain A/B, )
3: VAR_068322 (A590T, chain A/B, )
4: VAR_008953 (R591H, chain A/B, )
5: VAR_009934 (R594Q, chain A/B, )
6: VAR_068323 (L619M, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_008951
T
587
M
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
T
587
M
2
UniProt
VAR_008952
G
589
D
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
G
589
D
3
UniProt
VAR_068322
A
590
T
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
A
590
T
4
UniProt
VAR_008953
R
591
H
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
R
591
H
5
UniProt
VAR_009934
R
594
Q
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
R
594
Q
6
UniProt
VAR_068323
L
619
M
KCNQ1_HUMAN
Disease (LQT1)
---
A/B
L
619
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(2, 4)
Info
All Exons
Exon 1.20 (A:585-598 | B:584-598)
Exon 1.21c (A:599-621 | B:599-621)
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All Exon Boundaries
1: Boundary 1.18/1.20
2: Boundary 1.20/1.21c
3: Boundary 1.21c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000155840
2a
ENSE00001339597
chr11:
2466221-2466714
494
KCNQ1_HUMAN
1-129
129
0
-
-
1.6c
ENST00000155840
6c
ENSE00002145989
chr11:
2549158-2549248
91
KCNQ1_HUMAN
129-159
31
0
-
-
1.7
ENST00000155840
7
ENSE00001297564
chr11:
2591858-2591984
127
KCNQ1_HUMAN
160-202
43
0
-
-
1.8
ENST00000155840
8
ENSE00001315757
chr11:
2592555-2592633
79
KCNQ1_HUMAN
202-228
27
0
-
-
1.9
ENST00000155840
9
ENSE00001296137
chr11:
2593243-2593339
97
KCNQ1_HUMAN
228-260
33
0
-
-
1.10b
ENST00000155840
10b
ENSE00001324964
chr11:
2594076-2594216
141
KCNQ1_HUMAN
261-307
47
0
-
-
1.11
ENST00000155840
11
ENSE00000988678
chr11:
2604665-2604775
111
KCNQ1_HUMAN
308-344
37
0
-
-
1.12
ENST00000155840
12
ENSE00000988679
chr11:
2606442-2606537
96
KCNQ1_HUMAN
345-376
32
0
-
-
1.13
ENST00000155840
13
ENSE00000988680
chr11:
2608800-2608922
123
KCNQ1_HUMAN
377-417
41
0
-
-
1.14
ENST00000155840
14
ENSE00000988681
chr11:
2609943-2610084
142
KCNQ1_HUMAN
418-465
48
0
-
-
1.15
ENST00000155840
15
ENSE00000988682
chr11:
2683191-2683311
121
KCNQ1_HUMAN
465-505
41
0
-
-
1.16
ENST00000155840
16
ENSE00001057746
chr11:
2790074-2790149
76
KCNQ1_HUMAN
505-530
26
0
-
-
1.17
ENST00000155840
17
ENSE00001220454
chr11:
2797190-2797284
95
KCNQ1_HUMAN
531-562
32
0
-
-
1.18
ENST00000155840
18
ENSE00001220445
chr11:
2798216-2798262
47
KCNQ1_HUMAN
562-578
17
0
-
-
1.20
ENST00000155840
20
ENSE00001220439
chr11:
2799206-2799267
62
KCNQ1_HUMAN
578-598
21
2
A:585-598
B:584-598
14
15
1.21c
ENST00000155840
21c
ENSE00001390573
chr11:
2868997-2870221
1225
KCNQ1_HUMAN
599-676
78
2
A:599-621
B:599-621
23
23
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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