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3BIT
Asym. Unit
Info
Asym.Unit (175 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YEAST SPT16 N-TERMINAL DOMAIN
Authors
:
A. P. Vandemark, H. Xin, L. Mccullough, R. Rawlins, S. Bentley, A. Herou S. J. David, C. P. Hill, T. Formosa
Date
:
30 Nov 07 (Deposition) - 18 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pita-Bread, Aminopeptidase, Chromatin, Replication, Fact, Activator, Chromosomal Protein, Dna Damage, Dna Repair, Dna Replication, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription Regulation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. P. Vandemark, H. Xin, L. Mccullough, R. Rawlins, S. Bentley, A. Heroux, D. J. Stillman, C. P. Hill, T. Formosa
Structural And Functional Analysis Of The Spt16P N-Terminal Domain Reveals Overlapping Roles Of Yfact Subunits.
J. Biol. Chem. V. 283 5058 2008
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: GLYCEROL (GOLa)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
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No.
Name
Count
Type
Full Name
1
BME
3
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CL
4
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:270 , VAL A:271 , ASN A:363 , ARG A:373
BINDING SITE FOR RESIDUE CL A 454
2
AC2
SOFTWARE
GLU A:42 , THR A:256 , HOH A:871
BINDING SITE FOR RESIDUE BME A 456
3
AC3
SOFTWARE
ASN A:363 , ASN A:380
BINDING SITE FOR RESIDUE CL A 455
4
AC4
SOFTWARE
ARG A:336 , GLU A:340 , LYS B:129 , HOH B:917 , HOH B:1033
BINDING SITE FOR RESIDUE GOL B 460
5
AC5
SOFTWARE
ARG B:270 , VAL B:271 , ASN B:363 , ARG B:373 , HOH B:746
BINDING SITE FOR RESIDUE CL B 456
6
AC6
SOFTWARE
ASN B:363 , ASN B:380 , HOH B:850
BINDING SITE FOR RESIDUE CL B 457
7
AC7
SOFTWARE
HIS A:83 , HOH A:810 , GLU B:208 , GLU B:209 , LYS B:211 , HOH B:834
BINDING SITE FOR RESIDUE BME B 458
8
AC8
SOFTWARE
TYR B:257 , LEU B:269 , ARG B:270 , VAL B:271 , GLN B:415 , HOH B:648 , HOH B:681 , HOH B:748 , HOH B:770
BINDING SITE FOR RESIDUE BME B 459
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:1-447 | B:6-447 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL207W
1
YGL207W.1
VII:98973-102080
3108
SPT16_YEAST
1-1035
1035
2
A:1-447
B:6-447 (gaps)
447
442
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3bitA01 (A:2-173)
1b: CATH_3bitB01 (B:6-173)
2a: CATH_3bitA02 (A:174-447)
2b: CATH_3bitB02 (B:174-447)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Creatine Amidinohydrolase; Chain A, domain 1
(35)
Homologous Superfamily
:
Creatine Amidinohydrolase, subunit A, domain 1
(35)
Baker's yeast (Saccharomyces cerevisiae)
(3)
1a
3bitA01
A:2-173
1b
3bitB01
B:6-173
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Creatine Amidinohydrolase
(114)
Homologous Superfamily
:
Creatinase/methionine aminopeptidase superfamily
(114)
Baker's yeast (Saccharomyces cerevisiae)
(3)
2a
3bitA02
A:174-447
2b
3bitB02
B:174-447
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Pfam Domains
(0, 0)
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Asym.Unit (175 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (86 KB)
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