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3BIF
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (154 KB)
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(1)
Title
:
6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE EMPTY 6-PF-2K ACTIVE SITE
Authors
:
M. H. Yuen, C. A. Hasemann
Date
:
05 May 99 (Deposition) - 29 Sep 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Kinase, Phosphotransferase, Phosphatase, Hydrolase (Phospho), Glycolysis, Bifunctional Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Yuen, X. L. Wang, H. Mizuguchi, K. Uyeda, C. A. Hasemann
A Switch In The Kinase Domain Of Rat Testis 6-Phosphofructo-2-Kinase/Fructose-2, 6- Bisphosphatase.
Biochemistry V. 38 12333 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: SUCCINIC ACID (SINa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
3
SIN
1
Ligand/Ion
SUCCINIC ACID
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: S1 (AUTHOR)
7: S2 (AUTHOR)
8: S3 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:102 , LYS A:103 , LEU A:110 , THR A:132 , THR A:133 , ARG A:136 , ILE A:140 , CYS A:196 , TYR A:197 , SER A:200 , HOH A:604 , HOH A:678 , HOH A:727
BINDING SITE FOR RESIDUE BOG A 510
2
AC2
SOFTWARE
PHE A:299 , VAL A:375
BINDING SITE FOR RESIDUE BOG A 525
3
AC3
SOFTWARE
ARG A:255 , HIS A:256 , ASN A:262 , ARG A:305 , GLU A:325 , HIS A:390 , GLN A:391 , HOH A:689
BINDING SITE FOR RESIDUE PO4 A 515
4
AC4
SOFTWARE
TYR A:336 , ARG A:350 , LYS A:354 , TYR A:365 , GLN A:391 , ARG A:395 , HOH A:635 , HOH A:642 , HOH A:688 , HOH A:787
BINDING SITE FOR RESIDUE PO4 A 520
5
AC5
SOFTWARE
GLY A:75 , ARG A:78 , PHE A:91 , THR A:130 , ARG A:136 , ARG A:193 , TYR A:197 , HOH A:619 , HOH A:695 , HOH A:714 , HOH A:772
BINDING SITE FOR RESIDUE SIN A 505
6
S1
AUTHOR
GLY A:45 , LEU A:46 , PRO A:47 , ALA A:48 , ARG A:49 , GLY A:50 , LYS A:51 , THR A:52
WALKER-A MOTIF (GXXGXGKT), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF.
7
S2
AUTHOR
VAL A:124 , ALA A:125 , VAL A:126 , PHE A:127 , ASP A:128
WALKER-B MOTIF (ZZZZD, Z=HYDROPHOBIC), PART OF THE CLASSICAL MONONUCLEOTIDE BINDING MOTIF. ASP 128 SERVES AS A LIGAND TO THE MG OF MG-ATP.
8
S3
AUTHOR
HIS A:256 , GLU A:325 , HIS A:390
CATALYTIC TRIAD FOR THE FRUCTOSE-2,6- BISPHOSPHATASE REACTION.
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PG_MUTASE (A:253-262)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PG_MUTASE
PS00175
Phosphoglycerate mutase family phosphohistidine signature.
F264_RAT
254-263
1
A:253-262
[
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Exons
(13, 13)
Info
All Exons
Exon 1.3 (A:37-71)
Exon 1.4 (A:71-103)
Exon 1.5 (A:103-125)
Exon 1.6 (A:126-150)
Exon 1.7 (A:151-169)
Exon 1.8 (A:170-210)
Exon 1.10 (A:210-279)
Exon 1.11 (A:280-328)
Exon 1.15 (A:329-363)
Exon 1.16 (A:364-407)
Exon 1.17 (A:407-428)
Exon 1.18 (A:428-449)
Exon 1.19c (A:450-468)
View:
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All Exon Boundaries
01: Boundary 1.2a/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.15
10: Boundary 1.15/1.16
11: Boundary 1.16/1.17
12: Boundary 1.17/1.18
13: Boundary 1.18/1.19c
14: Boundary 1.19c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000028039
1
ENSRNOE00000280705
chr8:
114012543-114012569
27
F264_RAT
-
0
0
-
-
1.2a
ENSRNOT00000028039
2a
ENSRNOE00000201362
chr8:
114012889-114012992
104
F264_RAT
1-33
33
0
-
-
1.3
ENSRNOT00000028039
3
ENSRNOE00000201367
chr8:
114019691-114019807
117
F264_RAT
33-72
40
1
A:37-71
35
1.4
ENSRNOT00000028039
4
ENSRNOE00000201368
chr8:
114019949-114020045
97
F264_RAT
72-104
33
1
A:71-103
33
1.5
ENSRNOT00000028039
5
ENSRNOE00000201372
chr8:
114026200-114026266
67
F264_RAT
104-126
23
1
A:103-125
23
1.6
ENSRNOT00000028039
6
ENSRNOE00000201377
chr8:
114028370-114028444
75
F264_RAT
127-151
25
1
A:126-150
25
1.7
ENSRNOT00000028039
7
ENSRNOE00000201385
chr8:
114028761-114028817
57
F264_RAT
152-170
19
1
A:151-169
19
1.8
ENSRNOT00000028039
8
ENSRNOE00000201392
chr8:
114029422-114029543
122
F264_RAT
171-211
41
1
A:170-210
41
1.10
ENSRNOT00000028039
10
ENSRNOE00000201396
chr8:
114031424-114031631
208
F264_RAT
211-280
70
1
A:210-279
70
1.11
ENSRNOT00000028039
11
ENSRNOE00000201403
chr8:
114032132-114032278
147
F264_RAT
281-329
49
1
A:280-328
49
1.15
ENSRNOT00000028039
15
ENSRNOE00000201411
chr8:
114045247-114045351
105
F264_RAT
330-364
35
1
A:329-363
35
1.16
ENSRNOT00000028039
16
ENSRNOE00000201415
chr8:
114047233-114047362
130
F264_RAT
365-408
44
1
A:364-407
44
1.17
ENSRNOT00000028039
17
ENSRNOE00000300921
chr8:
114047457-114047519
63
F264_RAT
408-429
22
1
A:407-428
22
1.18
ENSRNOT00000028039
18
ENSRNOE00000348609
chr8:
114048504-114048568
65
F264_RAT
429-450
22
1
A:428-449
22
1.19c
ENSRNOT00000028039
19c
ENSRNOE00000365772
chr8:
114050180-114050534
355
F264_RAT
451-469
19
1
A:450-468
19
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3bifa1 (A:37-249)
2a: SCOP_d3bifa2 (A:250-468)
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)
(
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Folds
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(
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
(4)
Protein domain
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d3bifa1
A:37-249
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
(9)
Protein domain
:
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
(9)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(8)
2a
d3bifa2
A:250-468
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3bifA01 (A:37-242)
2a: CATH_3bifA02 (A:247-467)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Norway rat (Rattus norvegicus)
(38)
1a
3bifA01
A:37-242
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Norway rat (Rattus norvegicus)
(10)
2a
3bifA02
A:247-467
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Pfam Domains
(0, 0)
Info
all PFAM domains
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