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Getting 'PROSITE' information from database.
3BIC
Biol. Unit 3
Info
Asym.Unit (222 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (110 KB)
Biol.Unit 3 (214 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN METHYLMALONYL-COA MUTASE
Authors
:
E. Ugochukwu, G. Kochan, N. Pantic, E. Parizotto, E. S. Pilka, A. C. W. Pi O. Gileadi, F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. M. Edwards, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 Nov 07 (Deposition) - 25 Dec 07 (Release) - 14 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Organic Aciduria, Methylmalonyl Coa Mutase Deficiency, Metabolic Disease, Structural Genomics, Structural Genomics Consortium, Sgc, Cobalamin, Cobalt, Disease Mutation, Isomerase, Metal-Binding, Mitochondrion, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Froese, G. Kochan, J. R. Muniz, X. Wu, C. Gileadi, E. Ugochukwu, E. Krysztofinska, R. A. Gravel, U. Oppermann, W. W. Yue
Structures Of The Human Gtpase Mmaa And Vitamin B12-Dependent Methylmalonyl-Coa Mutase And Insight Into Their Complex Formation.
J. Biol. Chem. V. 285 38204 2010
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:594 , LYS A:595
BINDING SITE FOR RESIDUE CL A 803
[
close Site info
]
SAPs(SNPs)/Variants
(89, 178)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_023472 (I69V, chain A/B, )
02: VAR_026592 (P86L, chain A/B, )
03: VAR_026593 (G87E, chain A/B, )
04: VAR_004409 (R93H, chain A/B, )
05: VAR_026594 (G94R, chain A/B, )
06: VAR_022393 (G94V, chain A/B, )
07: VAR_026595 (P95R, chain A/B, )
08: VAR_004410 (W105R, chain A/B, )
09: VAR_026596 (R108C, chain A/B, )
10: VAR_026597 (R108G, chain A/B, )
11: VAR_022394 (R108H, chain A/B, )
12: VAR_023473 (Q109R, chain A/B, )
13: VAR_022395 (A137V, chain A/B, )
14: VAR_026598 (G145S, chain A/B, )
15: VAR_022396 (S148L, chain A/B, )
16: VAR_022397 (D156N, chain A/B, )
17: VAR_022398 (G158V, chain A/B, )
18: VAR_022399 (F174S, chain A/B, )
19: VAR_026599 (M186V, chain A/B, )
20: VAR_026600 (N189K, chain A/B, )
21: VAR_004411 (A191E, chain A/B, )
22: VAR_026601 (A197E, chain A/B, )
23: VAR_022400 (G203R, chain A/B, )
24: VAR_026602 (G215C, chain A/B, )
25: VAR_022401 (G215S, chain A/B, )
26: VAR_022402 (Q218H, chain A/B, )
27: VAR_022403 (N219Y, chain A/B, )
28: VAR_004412 (R228Q, chain A/B, )
29: VAR_026603 (T230I, chain A/B, )
30: VAR_004413 (Y231N, chain A/B, )
31: VAR_022404 (S262N, chain A/B, )
32: VAR_026604 (H265Y, chain A/B, )
33: VAR_026605 (L281S, chain A/B, )
34: VAR_026606 (G291E, chain A/B, )
35: VAR_022405 (Q293P, chain A/B, )
36: VAR_026607 (L305S, chain A/B, )
37: VAR_026608 (S306F, chain A/B, )
38: VAR_004414 (G312V, chain A/B, )
39: VAR_026609 (Y316C, chain A/B, )
40: VAR_023474 (A324T, chain A/B, )
41: VAR_022406 (L328F, chain A/B, )
42: VAR_023475 (L328P, chain A/B, )
43: VAR_026610 (L347R, chain A/B, )
44: VAR_026611 (H350Y, chain A/B, )
45: VAR_004416 (V368D, chain A/B, )
46: VAR_026612 (R369C, chain A/B, )
47: VAR_004417 (R369H, chain A/B, )
48: VAR_026613 (T370P, chain A/B, )
49: VAR_004418 (A377E, chain A/B, )
50: VAR_026614 (Q383H, chain A/B, )
51: VAR_026615 (Q383P, chain A/B, )
52: VAR_026616 (H386N, chain A/B, )
53: VAR_026617 (N388H, chain A/B, )
54: VAR_026620 (G426R, chain A/B, )
55: VAR_026621 (G427D, chain A/B, )
56: VAR_022407 (T499T, chain A/B, )
57: VAR_026622 (L518P, chain A/B, )
58: VAR_004419 (R532H, chain A/B, )
59: VAR_022408 (A535P, chain A/B, )
60: VAR_026623 (C560Y, chain A/B, )
61: VAR_026624 (T566R, chain A/B, )
62: VAR_026625 (F573S, chain A/B, )
63: VAR_022409 (Y587C, chain A/B, )
64: VAR_030495 (T598A, chain A/B, )
65: VAR_026626 (P615R, chain A/B, )
66: VAR_022410 (P615T, chain A/B, )
67: VAR_023476 (R616C, chain A/B, )
68: VAR_023477 (L617R, chain A/B, )
69: VAR_022411 (K621N, chain A/B, )
70: VAR_004420 (G623R, chain A/B, )
71: VAR_022412 (Q624R, chain A/B, )
72: VAR_004421 (G626C, chain A/B, )
73: VAR_022413 (H627R, chain A/B, )
74: VAR_004422 (G630E, chain A/B, )
75: VAR_004423 (V633G, chain A/B, )
76: VAR_022414 (G637E, chain A/B, )
77: VAR_026627 (G637R, chain A/B, )
78: VAR_022415 (F638I, chain A/B, )
79: VAR_022416 (D640Y, chain A/B, )
80: VAR_022417 (G642R, chain A/B, )
81: VAR_004424 (G648D, chain A/B, )
82: VAR_004425 (V669E, chain A/B, )
83: VAR_004426 (V671V, chain A/B, )
84: VAR_004427 (H678R, chain A/B, )
85: VAR_004429 (L685R, chain A/B, )
86: VAR_004430 (R694W, chain A/B, )
87: VAR_022418 (M700K, chain A/B, )
88: VAR_004431 (G703R, chain A/B, )
89: VAR_004432 (G717V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023472
I
69
V
MUTA_HUMAN
Polymorphism
115923556
A/B
I
69
V
02
UniProt
VAR_026592
P
86
L
MUTA_HUMAN
Disease (MMAM)
---
A/B
P
86
L
03
UniProt
VAR_026593
G
87
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
87
E
04
UniProt
VAR_004409
R
93
H
MUTA_HUMAN
Disease (MMAM)
121918251
A/B
R
93
H
05
UniProt
VAR_026594
G
94
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
94
R
06
UniProt
VAR_022393
G
94
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
94
V
07
UniProt
VAR_026595
P
95
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
P
95
R
08
UniProt
VAR_004410
W
105
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
W
105
R
09
UniProt
VAR_026596
R
108
C
MUTA_HUMAN
Disease (MMAM)
121918257
A/B
R
108
C
10
UniProt
VAR_026597
R
108
G
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
108
G
11
UniProt
VAR_022394
R
108
H
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
108
H
12
UniProt
VAR_023473
Q
109
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
109
R
13
UniProt
VAR_022395
A
137
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
137
V
14
UniProt
VAR_026598
G
145
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
145
S
15
UniProt
VAR_022396
S
148
L
MUTA_HUMAN
Disease (MMAM)
---
A/B
S
148
L
16
UniProt
VAR_022397
D
156
N
MUTA_HUMAN
Disease (MMAM)
---
A/B
D
156
N
17
UniProt
VAR_022398
G
158
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
158
V
18
UniProt
VAR_022399
F
174
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
F
174
S
19
UniProt
VAR_026599
M
186
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
M
186
V
20
UniProt
VAR_026600
N
189
K
MUTA_HUMAN
Disease (MMAM)
---
A/B
N
189
K
21
UniProt
VAR_004411
A
191
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
191
E
22
UniProt
VAR_026601
A
197
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
197
E
23
UniProt
VAR_022400
G
203
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
203
R
24
UniProt
VAR_026602
G
215
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
215
C
25
UniProt
VAR_022401
G
215
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
215
S
26
UniProt
VAR_022402
Q
218
H
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
218
H
27
UniProt
VAR_022403
N
219
Y
MUTA_HUMAN
Disease (MMAM)
---
A/B
N
219
Y
28
UniProt
VAR_004412
R
228
Q
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
228
Q
29
UniProt
VAR_026603
T
230
I
MUTA_HUMAN
Disease (MMAM)
---
A/B
T
230
I
30
UniProt
VAR_004413
Y
231
N
MUTA_HUMAN
Disease (MMAM)
---
A/B
Y
231
N
31
UniProt
VAR_022404
S
262
N
MUTA_HUMAN
Disease (MMAM)
---
A/B
S
262
N
32
UniProt
VAR_026604
H
265
Y
MUTA_HUMAN
Disease (MMAM)
---
A/B
H
265
Y
33
UniProt
VAR_026605
L
281
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
281
S
34
UniProt
VAR_026606
G
291
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
291
E
35
UniProt
VAR_022405
Q
293
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
293
P
36
UniProt
VAR_026607
L
305
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
305
S
37
UniProt
VAR_026608
S
306
F
MUTA_HUMAN
Disease (MMAM)
---
A/B
S
306
F
38
UniProt
VAR_004414
G
312
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
312
V
39
UniProt
VAR_026609
Y
316
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
Y
316
C
40
UniProt
VAR_023474
A
324
T
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
324
T
41
UniProt
VAR_022406
L
328
F
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
328
F
42
UniProt
VAR_023475
L
328
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
328
P
43
UniProt
VAR_026610
L
347
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
347
R
44
UniProt
VAR_026611
H
350
Y
MUTA_HUMAN
Disease (MMAM)
---
A/B
H
350
Y
45
UniProt
VAR_004416
V
368
D
MUTA_HUMAN
Disease (MMAM)
---
A/B
V
368
D
46
UniProt
VAR_026612
R
369
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
369
C
47
UniProt
VAR_004417
R
369
H
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
369
H
48
UniProt
VAR_026613
T
370
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
T
370
P
49
UniProt
VAR_004418
A
377
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
377
E
50
UniProt
VAR_026614
Q
383
H
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
383
H
51
UniProt
VAR_026615
Q
383
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
383
P
52
UniProt
VAR_026616
H
386
N
MUTA_HUMAN
Disease (MMAM)
---
A/B
H
386
N
53
UniProt
VAR_026617
N
388
H
MUTA_HUMAN
Disease (MMAM)
---
A/B
N
388
H
54
UniProt
VAR_026620
G
426
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
426
R
55
UniProt
VAR_026621
G
427
D
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
427
D
56
UniProt
VAR_022407
A
499
T
MUTA_HUMAN
Polymorphism
2229385
A/B
T
499
T
57
UniProt
VAR_026622
L
518
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
518
P
58
UniProt
VAR_004419
R
532
H
MUTA_HUMAN
Polymorphism
1141321
A/B
R
532
H
59
UniProt
VAR_022408
A
535
P
MUTA_HUMAN
Disease (MMAM)
---
A/B
A
535
P
60
UniProt
VAR_026623
C
560
Y
MUTA_HUMAN
Disease (MMAM)
---
A/B
C
560
Y
61
UniProt
VAR_026624
T
566
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
T
566
R
62
UniProt
VAR_026625
F
573
S
MUTA_HUMAN
Disease (MMAM)
---
A/B
F
573
S
63
UniProt
VAR_022409
Y
587
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
Y
587
C
64
UniProt
VAR_030495
T
598
A
MUTA_HUMAN
Polymorphism
9473556
A/B
T
598
A
65
UniProt
VAR_026626
P
615
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
P
615
R
66
UniProt
VAR_022410
P
615
T
MUTA_HUMAN
Disease (MMAM)
---
A/B
P
615
T
67
UniProt
VAR_023476
R
616
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
616
C
68
UniProt
VAR_023477
L
617
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
617
R
69
UniProt
VAR_022411
K
621
N
MUTA_HUMAN
Disease (MMAM)
---
A/B
K
621
N
70
UniProt
VAR_004420
G
623
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
623
R
71
UniProt
VAR_022412
Q
624
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
Q
624
R
72
UniProt
VAR_004421
G
626
C
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
626
C
73
UniProt
VAR_022413
H
627
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
H
627
R
74
UniProt
VAR_004422
G
630
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
630
E
75
UniProt
VAR_004423
V
633
G
MUTA_HUMAN
Disease (MMAM)
---
A/B
V
633
G
76
UniProt
VAR_022414
G
637
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
637
E
77
UniProt
VAR_026627
G
637
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
637
R
78
UniProt
VAR_022415
F
638
I
MUTA_HUMAN
Disease (MMAM)
---
A/B
F
638
I
79
UniProt
VAR_022416
D
640
Y
MUTA_HUMAN
Disease (MMAM)
---
A/B
D
640
Y
80
UniProt
VAR_022417
G
642
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
642
R
81
UniProt
VAR_004424
G
648
D
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
648
D
82
UniProt
VAR_004425
V
669
E
MUTA_HUMAN
Disease (MMAM)
---
A/B
V
669
E
83
UniProt
VAR_004426
I
671
V
MUTA_HUMAN
Polymorphism
8589
A/B
V
671
V
84
UniProt
VAR_004427
H
678
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
H
678
R
85
UniProt
VAR_004429
L
685
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
L
685
R
86
UniProt
VAR_004430
R
694
W
MUTA_HUMAN
Disease (MMAM)
---
A/B
R
694
W
87
UniProt
VAR_022418
M
700
K
MUTA_HUMAN
Disease (MMAM)
---
A/B
M
700
K
88
UniProt
VAR_004431
G
703
R
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
703
R
89
UniProt
VAR_004432
G
717
V
MUTA_HUMAN
Disease (MMAM)
---
A/B
G
717
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: METMALONYL_COA_MUTASE (A:403-428,B:403-428)
2: B12_BINDING (A:614-745,B:614-746)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
METMALONYL_COA_MUTASE
PS00544
Methylmalonyl-CoA mutase signature.
MUTA_HUMAN
403-428
2
A:403-428
B:403-428
2
B12_BINDING
PS51332
B12-binding domain profile.
MUTA_HUMAN
614-746
2
A:614-745
B:614-746
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
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CATH Domains
(2, 4)
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1a: CATH_3bicA02 (A:580-743)
1b: CATH_3bicB02 (B:580-757)
2a: CATH_3bicA01 (A:61-576)
2b: CATH_3bicB01 (B:38-576)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.280, no name defined]
(23)
Human (Homo sapiens)
(1)
1a
3bicA02
A:580-743
1b
3bicB02
B:580-757
Architecture
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Alpha-Beta Barrel
(2994)
Topology
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TIM Barrel
(2806)
Homologous Superfamily
:
[code=3.20.20.240, no name defined]
(12)
Human (Homo sapiens)
(1)
2a
3bicA01
A:61-576
2b
3bicB01
B:38-576
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