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3BHT
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
STRUCTURE OF PHOSPHORYLATED THR160 CDK2/CYCLIN A IN COMPLEX WITH THE INHIBITOR MERIOLIN 3
Authors
:
A. Echalier, K. Bettayeb, Y. Ferandin, O. Lozach, M. Clement, A. Valett F. Liger, B. Marquet, J. C. Morris, J. A. Endicott, B. Joseph, L. Meijer
Date
:
29 Nov 07 (Deposition) - 12 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ser/Thr Protein Kinase, Transferase, Phosphorylation, Cell Cycle, Atp-Binding, Cell Division, Mitosis, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Cyclin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Bettayeb, O. M. Tirado, S. Marionneau-Lambot, Y. Ferandin, O. Lozach, J. C. Morris, S. Mateo-Lozano, P. Drueckes, M. H. Kubbutat, F. Liger, B. Marquet, B. Joseph, A. Echalier, J. A. Endicott, V. Notario, L. Meijer
Meriolins, A New Class Of Cell Death Inducing Kinase Inhibitors With Enhanced Selectivity For Cyclin-Dependent Kinases
Cancer Res. V. 67 8325 2007
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: 4-(4-METHOXY-1H-PYRROLO[2,3-B]PYRI... (MFRa)
1b: 4-(4-METHOXY-1H-PYRROLO[2,3-B]PYRI... (MFRb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: MONOTHIOGLYCEROL (SGMa)
3b: MONOTHIOGLYCEROL (SGMb)
3c: MONOTHIOGLYCEROL (SGMc)
4a: PHOSPHOTHREONINE (TPOa)
4b: PHOSPHOTHREONINE (TPOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MFR
2
Ligand/Ion
4-(4-METHOXY-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)PYRIMIDIN-2-AMINE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
SGM
3
Ligand/Ion
MONOTHIOGLYCEROL
4
TPO
2
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET B:200 , GLN B:203 , ILE B:206 , HOH B:640 , HOH B:669
BINDING SITE FOR RESIDUE MG B 1
2
AC2
SOFTWARE
MET D:200 , GLN D:203 , ILE D:206 , HOH D:615 , HOH D:623 , HOH D:647
BINDING SITE FOR RESIDUE MG D 2
3
AC3
SOFTWARE
ILE A:10 , ALA A:31 , LYS A:33 , GLU A:51 , VAL A:64 , PHE A:80 , GLU A:81 , LEU A:83 , LEU A:134 , ASP A:145
BINDING SITE FOR RESIDUE MFR A 299
4
AC4
SOFTWARE
ALA C:31 , LYS C:33 , GLU C:51 , PHE C:80 , GLU C:81 , LEU C:83 , LEU C:134 , ASP C:145
BINDING SITE FOR RESIDUE MFR C 299
5
AC5
SOFTWARE
HOH A:368 , MET B:189 , CYS B:193 , ARG B:241 , ASP B:305 , HOH B:642 , HOH B:650
BINDING SITE FOR RESIDUE SGM B 4
6
AC6
SOFTWARE
CYS B:327 , GLU B:330 , HOH B:656 , HOH B:707
BINDING SITE FOR RESIDUE SGM B 5
7
AC7
SOFTWARE
LYS D:192 , CYS D:193 , ARG D:241 , ASP D:305
BINDING SITE FOR RESIDUE SGM D 3
[
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016157 (Y15S, chain A/C, )
2: VAR_053927 (V18L, chain A/C, )
3: VAR_041972 (P45L, chain A/C, )
4: VAR_019988 (T290S, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016157
Y
15
S
CDK2_HUMAN
Polymorphism
3087335
A/C
Y
15
S
2
UniProt
VAR_053927
V
18
L
CDK2_HUMAN
Polymorphism
11554376
A/C
V
18
L
3
UniProt
VAR_041972
P
45
L
CDK2_HUMAN
Unclassified
---
A/C
P
45
L
4
UniProt
VAR_019988
T
290
S
CDK2_HUMAN
Polymorphism
2069413
A/C
T
290
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:10-33,C:10-33)
2: PROTEIN_KINASE_ST (A:123-135,C:123-135)
3: CYCLINS (B:211-242,D:211-242)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDK2_HUMAN
10-33
2
A:10-33
C:10-33
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDK2_HUMAN
123-135
2
A:123-135
C:123-135
3
CYCLINS
PS00292
Cyclins signature.
CCNA2_BOVIN
209-240
2
B:211-242
D:211-242
[
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:1-38 | C:1-39)
Exon 1.2 (A:41-65 | C:39-65)
Exon 1.3 (A:65-105 | C:65-105)
Exon 1.4 (A:106-162 | C:106-162)
Exon 1.5 (A:163-196 | C:163-196)
Exon 1.6 (A:197-264 | C:197-264 (gaps))
Exon 1.7 (A:265-298 | C:265-296)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000266970
1
ENSE00001301614
chr12:
56360556-56360908
353
CDK2_HUMAN
1-39
39
2
A:1-38
C:1-39
38
39
1.2
ENST00000266970
2
ENSE00000838625
chr12:
56361641-56361718
78
CDK2_HUMAN
39-65
27
2
A:41-65
C:39-65
25
27
1.3
ENST00000266970
3
ENSE00000838626
chr12:
56361833-56361953
121
CDK2_HUMAN
65-105
41
2
A:65-105
C:65-105
41
41
1.4
ENST00000266970
4
ENSE00000838629
chr12:
56362562-56362732
171
CDK2_HUMAN
106-162
57
2
A:106-162
C:106-162
57
57
1.5
ENST00000266970
5
ENSE00001704611
chr12:
56363259-56363360
102
CDK2_HUMAN
163-196
34
2
A:163-196
C:163-196
34
34
1.6
ENST00000266970
6
ENSE00000938649
chr12:
56364828-56365031
204
CDK2_HUMAN
197-264
68
2
A:197-264
C:197-264 (gaps)
68
68
1.7
ENST00000266970
7
ENSE00001215687
chr12:
56365305-56366565
1261
CDK2_HUMAN
265-298
34
2
A:265-298
C:265-296
34
32
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d3bhtb1 (B:171-308)
1b: SCOP_d3bhtb2 (B:309-432)
1c: SCOP_d3bhtd1 (D:171-308)
1d: SCOP_d3bhtd2 (D:309-432)
2a: SCOP_d3bhta_ (A:)
2b: SCOP_d3bhtc_ (C:)
View:
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Classes
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)
(
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(
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(
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cyclin-like
(137)
Superfamily
:
Cyclin-like
(137)
Family
:
Cyclin
(117)
Protein domain
:
Cyclin A
(82)
Cow (Bos taurus) [TaxId: 9913]
(9)
1a
d3bhtb1
B:171-308
1b
d3bhtb2
B:309-432
1c
d3bhtd1
D:171-308
1d
d3bhtd2
D:309-432
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Human (Homo sapiens) [TaxId: 9606]
(336)
2a
d3bhta_
A:
2b
d3bhtc_
C:
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_3bhtC01 (C:1-84)
1b: CATH_3bhtA01 (A:-1-84)
2a: CATH_3bhtB01 (B:181-194,B:308-432)
2b: CATH_3bhtD01 (D:181-194,D:308-432)
2c: CATH_3bhtB02 (B:195-307)
2d: CATH_3bhtD02 (D:195-307)
3a: CATH_3bhtC02 (C:85-294)
3b: CATH_3bhtA02 (A:85-295)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3bhtC01
C:1-84
1b
3bhtA01
A:-1-84
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cyclin A; domain 1
(136)
Homologous Superfamily
:
[code=1.10.472.10, no name defined]
(99)
Human (Homo sapiens)
(84)
2a
3bhtB01
B:181-194,B:308-432
2b
3bhtD01
D:181-194,D:308-432
2c
3bhtB02
B:195-307
2d
3bhtD02
D:195-307
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
3bhtC02
C:85-294
3b
3bhtA02
A:85-295
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Chain C
Chain D
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Asym.Unit (205 KB)
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