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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3BHJ
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CARBONYL REDUCTASE 1 IN COMPLEX WITH GLUTATHIONE
Authors
:
D. Rauh, R. L. Bateman, K. M. Shokat
Date
:
28 Nov 07 (Deposition) - 21 Oct 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Nadp
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. L. Bateman, D. Rauh, B. Tavshanjian, K. M. Shokat
Human Carbonyl Reductase 1 Is An S-Nitrosoglutathione Reductase
J. Biol. Chem. V. 283 35756 2008
[
close entry info
]
Hetero Components
(6, 13)
Info
All Hetero Components
1a: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOL... (AB3a)
1b: 3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOL... (AB3b)
2a: GLYCEROL (GOLa)
3a: GLUTATHIONE (GSHa)
4a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
5a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
5b: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33b)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AB3
2
Ligand/Ion
3-(4-AMINO-1-TERT-BUTYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-3-YL)PHENOL
2
GOL
1
Ligand/Ion
GLYCEROL
3
GSH
1
Ligand/Ion
GLUTATHIONE
4
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5
P33
2
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
6
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:64 , THR A:163 , ARG A:209 , HOH A:380 , HOH A:387 , HOH A:471
BINDING SITE FOR RESIDUE SO4 A 310
02
AC2
SOFTWARE
LYS A:216 , GLY A:217 , ASP A:218 , LYS A:219 , HOH A:327 , HOH A:371
BINDING SITE FOR RESIDUE SO4 A 311
03
AC3
SOFTWARE
ARG A:57 , PHE A:58 , HOH A:476
BINDING SITE FOR RESIDUE SO4 A 313
04
AC4
SOFTWARE
LYS A:14 , GLY A:15 , HOH A:331 , HOH A:358
BINDING SITE FOR RESIDUE SO4 A 314
05
AC5
SOFTWARE
SER A:2 , GLY A:3 , GLN A:47 , GLN A:50 , LYS A:129 , HOH A:522
BINDING SITE FOR RESIDUE SO4 A 319
06
AC6
SOFTWARE
ARG A:41 , ARG A:118 , HOH A:402 , HOH A:451 , HOH A:459
BINDING SITE FOR RESIDUE SO4 A 320
07
AC7
SOFTWARE
SER A:139 , ILE A:140 , MET A:141 , TYR A:193 , GLY A:228 , TRP A:229 , HOH A:394 , HOH A:423
BINDING SITE FOR RESIDUE AB3 A 307
08
AC8
SOFTWARE
ARG A:22 , ARG A:26 , ILE A:140 , ARG A:144 , GLU A:244 , HOH A:490 , HOH A:555
BINDING SITE FOR RESIDUE AB3 A 308
09
AC9
SOFTWARE
GLY A:11 , ASN A:13 , LYS A:14 , GLY A:15 , ILE A:16 , ARG A:37 , LEU A:61 , ASP A:62 , ILE A:63 , ASP A:64 , ASN A:89 , ALA A:90 , GLY A:91 , ILE A:92 , SER A:138 , TYR A:193 , LYS A:197 , PRO A:227 , GLY A:228 , TRP A:229 , THR A:232 , ASP A:233 , MET A:234 , ALA A:235 , HOH A:322 , HOH A:323 , HOH A:331 , HOH A:334 , HOH A:338 , HOH A:345 , HOH A:360 , HOH A:404 , HOH A:427 , HOH A:545 , HOH A:546
BINDING SITE FOR RESIDUE NAP A 309
10
BC1
SOFTWARE
PHE A:94 , LYS A:95 , PHE A:102 , GLN A:105 , SER A:191 , ALA A:192 , TYR A:193 , MET A:234 , HOH A:340 , HOH A:367 , HOH A:406 , HOH A:435 , HOH A:470 , HOH A:492 , HOH A:518
BINDING SITE FOR RESIDUE GSH A 315
11
BC2
SOFTWARE
ALA A:93 , THR A:122 , LEU A:125 , HIS A:207 , LYS A:210 , GLN A:214 , HOH A:487 , HOH A:488 , HOH A:533
BINDING SITE FOR RESIDUE P33 A 316
12
BC3
SOFTWARE
GLN A:60 , SER A:68 , LYS A:156 , GLU A:166 , LEU A:170
BINDING SITE FOR RESIDUE P33 A 317
13
BC4
SOFTWARE
CYS A:25 , ARG A:26 , PHE A:28 , SER A:29 , GLN A:184
BINDING SITE FOR RESIDUE GOL A 318
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059053 (V87I, chain A, )
2: VAR_031706 (P130S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059053
V
88
I
CBR1_HUMAN
Polymorphism
1143663
A
V
87
I
2
UniProt
VAR_031706
P
131
S
CBR1_HUMAN
Polymorphism
41557318
A
P
130
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:180-208)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
CBR1_HUMAN
181-209
1
A:180-208
[
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:2-96)
Exon 1.2a (A:96-132)
Exon 1.3c (A:132-276)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3c
4: Boundary 1.3c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290349
1a
ENSE00002172104
chr21:
37442239-37442702
464
CBR1_HUMAN
1-97
97
1
A:2-96
95
1.2a
ENST00000290349
2a
ENSE00001044165
chr21:
37443248-37443355
108
CBR1_HUMAN
97-133
37
1
A:96-132
37
1.3c
ENST00000290349
3c
ENSE00001044162
chr21:
37444744-37445464
721
CBR1_HUMAN
133-277
145
1
A:132-276
145
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3bhja_ (A:)
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3bhja_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3bhjA00 (A:2-276)
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(
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
3bhjA00
A:2-276
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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