PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3BG1
Asym. Unit
Info
Asym.Unit (434 KB)
Biol.Unit 1 (426 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (217 KB)
Biol.Unit 4 (112 KB)
Biol.Unit 5 (110 KB)
Biol.Unit 6 (113 KB)
Biol.Unit 7 (110 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ARCHITECTURE OF A COAT FOR THE NUCLEAR PORE MEMBRANE
Authors
:
A. Hoelz
Date
:
23 Nov 07 (Deposition) - 01 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: E,F,G,H (1x)
Biol. Unit 4: A,B (1x)
Biol. Unit 5: C,D (1x)
Biol. Unit 6: E,F (1x)
Biol. Unit 7: G,H (1x)
Keywords
:
Npc, Transport, Wd Repeat, Autocatalytic Cleavage, Mrna Transport, Nuclear Pore Complex, Nucleus, Phosphoprotein, Rna-Binding, Translocation, Protein Transport, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. C. Hsia, P. Stavropoulos, G. Blobel, A. Hoelz
Architecture Of A Coat For The Nuclear Pore Membrane.
Cell(Cambridge, Mass. ) V. 131 1313 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_053413 (S172L, chain A/D/E/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_053413
S
172
L
SEC13_HUMAN
Polymorphism
34078590
A/D/E/H
S
172
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(9, 36)
Info
All Exons
Exon 1.3c (A:14-16 | D:14-16 | E:14-16 | H:14...)
Exon 1.4a (A:17-55 | D:17-55 | E:17-55 | H:17...)
Exon 1.5e (A:55-106 | D:55-106 | E:55-106 | H...)
Exon 1.6a (A:106-150 | D:106-150 | E:106-150 ...)
Exon 1.7c (A:151-195 (gaps) | D:151-195 (gaps...)
Exon 1.7d (A:195-236 | D:195-236 | E:195-236 ...)
Exon 1.8c (A:237-285 | D:237-285 | E:237-285 ...)
Exon 1.9d (A:286-304 | D:286-302 | E:286-304 ...)
Exon 2.1 (B:130-552 | C:130-552 (gaps) | F:1...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3c
02: Boundary 1.3c/1.4a
03: Boundary 1.4a/1.5e
04: Boundary 1.5e/1.6a
05: Boundary 1.6a/1.7c
06: Boundary 1.7c/1.7d
07: Boundary 1.7d/1.8c
08: Boundary 1.8c/1.9d
09: Boundary 1.9d/-
10: Boundary -/2.1
11: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000350697
1a
ENSE00001397686
chr3:
10362862-10362734
129
SEC13_HUMAN
1-1
1
0
-
-
1.3c
ENST00000350697
3c
ENSE00001735096
chr3:
10359778-10359734
45
SEC13_HUMAN
2-16
15
4
A:14-16
D:14-16
E:14-16
H:14-16
3
3
3
3
1.4a
ENST00000350697
4a
ENSE00001029797
chr3:
10357120-10357005
116
SEC13_HUMAN
17-55
39
4
A:17-55
D:17-55
E:17-55
H:17-55
39
39
39
39
1.5e
ENST00000350697
5e
ENSE00001217520
chr3:
10354414-10354263
152
SEC13_HUMAN
55-106
52
4
A:55-106
D:55-106
E:55-106
H:55-106
52
52
52
52
1.6a
ENST00000350697
6a
ENSE00001029792
chr3:
10353782-10353649
134
SEC13_HUMAN
106-150
45
4
A:106-150
D:106-150
E:106-150
H:106-150
45
45
45
45
1.7c
ENST00000350697
7c
ENSE00001029804
chr3:
10347376-10347243
134
SEC13_HUMAN
151-195
45
4
A:151-195 (gaps)
D:151-195 (gaps)
E:151-195 (gaps)
H:151-195 (gaps)
45
45
45
45
1.7d
ENST00000350697
7d
ENSE00001029806
chr3:
10346840-10346717
124
SEC13_HUMAN
195-236
42
4
A:195-236
D:195-236
E:195-236
H:195-236
42
42
42
42
1.8c
ENST00000350697
8c
ENSE00001029798
chr3:
10345856-10345710
147
SEC13_HUMAN
237-285
49
4
A:237-285
D:237-285
E:237-285
H:237-285
49
49
49
49
1.9d
ENST00000350697
9d
ENSE00001029794
chr3:
10343058-10342615
444
SEC13_HUMAN
286-322
37
4
A:286-304
D:286-302
E:286-304
H:286-302
19
17
19
17
2.1
YGL092W
1
YGL092W.1
VII:337909-341862
3954
NU145_YEAST
1-1317
1317
4
B:130-552
C:130-552 (gaps)
F:130-552
G:130-552 (gaps)
423
423
423
423
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (434 KB)
Header - Asym.Unit
Biol.Unit 1 (426 KB)
Header - Biol.Unit 1
Biol.Unit 2 (216 KB)
Header - Biol.Unit 2
Biol.Unit 3 (217 KB)
Header - Biol.Unit 3
Biol.Unit 4 (112 KB)
Header - Biol.Unit 4
Biol.Unit 5 (110 KB)
Header - Biol.Unit 5
Biol.Unit 6 (113 KB)
Header - Biol.Unit 6
Biol.Unit 7 (110 KB)
Header - Biol.Unit 7
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3BG1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help