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3BFX
Asym. Unit
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Asym.Unit (103 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SULFOTRANSFERASE SULT1C1 IN COMPLEX WITH PAP
Authors
:
A. Dong, L. Dombrovski, P. Loppnau, A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)
Date
:
23 Nov 07 (Deposition) - 04 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Sulfotransferase, Pap, Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Consortium, Sgc, Alternative Splicing, Cytoplasm, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dombrovski, A. Dong, A. Bochkarev, A. N. Plotnikov
Crystal Structures Of Human Sulfotransferases Sult1B1 And Sult1C1 Complexed With The Cofactor Product Adenosine-3'-5'-Diphosphate (Pap).
Proteins V. 64 1091 2006
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
2
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:49 , ALA A:50 , GLY A:51 , THR A:52 , THR A:53 , TRP A:54 , ARG A:131 , SER A:139 , TYR A:194 , THR A:228 , SER A:229 , PHE A:230 , MET A:233 , MET A:257 , ARG A:258 , LYS A:259 , GLY A:260 , HOH A:4009 , HOH A:4011 , HOH A:4015 , HOH A:4019 , HOH A:4025 , HOH A:4058
BINDING SITE FOR RESIDUE A3P A 4000
2
AC2
SOFTWARE
HOH A:4017 , HOH A:4026 , HOH A:4042 , HOH A:4100 , HOH A:4120 , LYS B:49 , ALA B:50 , GLY B:51 , THR B:52 , THR B:53 , TRP B:54 , ARG B:131 , SER B:139 , TYR B:194 , THR B:228 , PHE B:230 , MET B:233 , PHE B:256 , MET B:257 , ARG B:258 , LYS B:259 , GLY B:260 , HOH B:348
BINDING SITE FOR RESIDUE A3P A 4001
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021986 (Y128H, chain A/B, )
2: VAR_061888 (R282T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021986
Y
128
H
ST1C2_HUMAN
Polymorphism
17036091
A/B
Y
128
H
2
UniProt
VAR_061888
R
282
T
ST1C2_HUMAN
Polymorphism
45515691
A/B
R
282
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.2a (A:12-51 | B:12-51)
Exon 1.3b (A:51-93 (gaps) | B:51-93 (gaps))
Exon 1.5c (A:93-125 | B:93-125)
Exon 1.5f (A:126-168 | B:126-168)
Exon 1.6 (A:168-199 | B:168-199)
Exon 1.7 (A:200-260 (gaps) | B:200-260 (gaps...)
Exon 1.8d (A:260-296 | B:260-296)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3b
3: Boundary 1.3b/1.5c
4: Boundary 1.5c/1.5f
5: Boundary 1.5f/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8d
8: Boundary 1.8d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251481
1a
ENSE00001269368
chr2:
108905095-108905526
432
ST1C2_HUMAN
-
0
0
-
-
1.2a
ENST00000251481
2a
ENSE00000804415
chr2:
108910103-108910274
172
ST1C2_HUMAN
1-51
51
2
A:12-51
B:12-51
40
40
1.3b
ENST00000251481
3b
ENSE00000772727
chr2:
108910685-108910810
126
ST1C2_HUMAN
51-93
43
2
A:51-93 (gaps)
B:51-93 (gaps)
43
43
1.5c
ENST00000251481
5c
ENSE00001269408
chr2:
108917294-108917391
98
ST1C2_HUMAN
93-125
33
2
A:93-125
B:93-125
33
33
1.5f
ENST00000251481
5f
ENSE00001653740
chr2:
108921030-108921156
127
ST1C2_HUMAN
126-168
43
2
A:126-168
B:126-168
43
43
1.6
ENST00000251481
6
ENSE00001744815
chr2:
108921628-108921722
95
ST1C2_HUMAN
168-199
32
2
A:168-199
B:168-199
32
32
1.7
ENST00000251481
7
ENSE00001719044
chr2:
108921871-108922051
181
ST1C2_HUMAN
200-260
61
2
A:200-260 (gaps)
B:200-260 (gaps)
61
61
1.8d
ENST00000251481
8d
ENSE00001414539
chr2:
108924808-108926371
1564
ST1C2_HUMAN
260-296
37
2
A:260-296
B:260-296
37
37
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3bfxb_ (B:)
2a: SCOP_d3bfxa1 (A:12-296)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d3bfxb_
B:
Family
:
PAPS sulfotransferase
(54)
Protein domain
:
Sulfotransferase Sult1c2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d3bfxa1
A:12-296
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3bfxB00 (B:12-296)
1b: CATH_3bfxA00 (A:12-296)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3bfxB00
B:12-296
1b
3bfxA00
A:12-296
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (103 KB)
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