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3BFN
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (47 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MOTOR DOMAIN OF HUMAN KINESIN FAMILY MEMBER 22
Authors
:
H. Zhu, Y. Shen, W. Tempel, E. Dobrovetsky, F. Mackenzie, C. H. Arrowsmi A. M. Edwards, J. Weigelt, A. Bochkarev, H. Park, Structural Genomic Consortium (Sgc)
Date
:
22 Nov 07 (Deposition) - 04 Dec 07 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Limited Proteolysis, Kinesin, Structural Genomics Consortium, Motor Domain, Adp, Sgc, Atp-Binding, Dna-Binding, Microtubule, Motor Protein, Nucleotide-Binding, Nucleus, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, Y. Shen, W. Tempel, E. Dobrovetsky, F. Mackenzie, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22.
To Be Published
[
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
3a: (UNKa)
3b: (UNKb)
3c: (UNKc)
3d: (UNKd)
3e: (UNKe)
3f: (UNKf)
3g: (UNKg)
3h: (UNKh)
3i: (UNKi)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
UNK
9
Mod. Amino Acid
4
UNX
8
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:134 , ADP A:802 , HOH A:827 , HOH A:828 , HOH A:834
BINDING SITE FOR RESIDUE MG A 801
02
AC2
SOFTWARE
ARG A:43 , VAL A:44 , ASP A:91
BINDING SITE FOR RESIDUE UNX A 701
03
AC3
SOFTWARE
GLN A:89 , MET A:152
BINDING SITE FOR RESIDUE UNX A 702
04
AC4
SOFTWARE
ASP A:200 , CYS A:201 , ARG A:202 , THR A:299
BINDING SITE FOR RESIDUE UNX A 703
05
AC5
SOFTWARE
ARG A:45 , ARG A:97
BINDING SITE FOR RESIDUE UNX A 704
06
AC6
SOFTWARE
GLN A:119 , ASN A:120 , SER A:336 , ALA A:337
BINDING SITE FOR RESIDUE UNX A 705
07
AC7
SOFTWARE
GLN A:101 , ARG A:364
BINDING SITE FOR RESIDUE UNX A 706
08
AC8
SOFTWARE
GLU A:178 , TYR A:180
BINDING SITE FOR RESIDUE UNX A 707
09
AC9
SOFTWARE
ARG A:159 , SER A:217 , PHE A:218
BINDING SITE FOR RESIDUE UNX A 708
10
BC1
SOFTWARE
ARG A:49 , ARG A:51 , PRO A:52 , PRO A:128 , THR A:129 , GLY A:130 , ALA A:131 , GLY A:132 , LYS A:133 , THR A:134 , HIS A:135 , MG A:801 , HOH A:805 , HOH A:828 , HOH A:834
BINDING SITE FOR RESIDUE ADP A 802
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067345 (P148L, chain A, )
2: VAR_067346 (P148S, chain A, )
3: VAR_067347 (R149L, chain A, )
4: VAR_067348 (R149Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067345
P
148
L
KIF22_HUMAN
Disease (SEMDJL2)
193922921
A
P
148
L
2
UniProt
VAR_067346
P
148
S
KIF22_HUMAN
Disease (SEMDJL2)
193922920
A
P
148
S
3
UniProt
VAR_067347
R
149
L
KIF22_HUMAN
Disease (SEMDJL2)
---
A
R
149
L
4
UniProt
VAR_067348
R
149
Q
KIF22_HUMAN
Disease (SEMDJL2)
193922922
A
R
149
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:43-368)
2: KINESIN_MOTOR_1 (A:268-279)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF22_HUMAN
43-368
1
A:43-368
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF22_HUMAN
268-279
1
A:268-279
[
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Exons
(6, 6)
Info
All Exons
Exon 1.2 (A:35-89 (gaps))
Exon 1.3b (A:89-132)
Exon 1.4 (A:132-183)
Exon 1.5a (A:184-253 (gaps))
Exon 1.6 (A:254-330 (gaps))
Exon 1.7 (A:331-607 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000160827
1a
ENSE00001544520
chr16:
29802041-29802150
110
KIF22_HUMAN
1-24
24
0
-
-
1.2
ENST00000160827
2
ENSE00001668296
chr16:
29808214-29808409
196
KIF22_HUMAN
24-89
66
1
A:35-89 (gaps)
60
1.3b
ENST00000160827
3b
ENSE00001592164
chr16:
29809695-29809822
128
KIF22_HUMAN
89-132
44
1
A:89-132
44
1.4
ENST00000160827
4
ENSE00001608077
chr16:
29809914-29810068
155
KIF22_HUMAN
132-183
52
1
A:132-183
52
1.5a
ENST00000160827
5a
ENSE00001623779
chr16:
29810296-29810505
210
KIF22_HUMAN
184-253
70
1
A:184-253 (gaps)
70
1.6
ENST00000160827
6
ENSE00001614981
chr16:
29810585-29810815
231
KIF22_HUMAN
254-330
77
1
A:254-330 (gaps)
77
1.7
ENST00000160827
7
ENSE00001784321
chr16:
29810949-29811102
154
KIF22_HUMAN
331-382
52
1
A:331-607 (gaps)
50
1.8
ENST00000160827
8
ENSE00001765213
chr16:
29811234-29811369
136
KIF22_HUMAN
382-427
46
0
-
-
1.9
ENST00000160827
9
ENSE00001747434
chr16:
29814090-29814258
169
KIF22_HUMAN
427-483
57
0
-
-
1.10
ENST00000160827
10
ENSE00001597834
chr16:
29814770-29814929
160
KIF22_HUMAN
484-537
54
0
-
-
1.11
ENST00000160827
11
ENSE00001643614
chr16:
29815319-29815386
68
KIF22_HUMAN
537-559
23
0
-
-
1.13
ENST00000160827
13
ENSE00000868486
chr16:
29816135-29816347
213
KIF22_HUMAN
560-630
71
0
-
-
1.14
ENST00000160827
14
ENSE00000681418
chr16:
29816436-29816495
60
KIF22_HUMAN
631-650
20
0
-
-
1.15
ENST00000160827
15
ENSE00001318180
chr16:
29816584-29816706
123
KIF22_HUMAN
651-665
15
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3bfnA01 (A:44-369)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
3bfnA01
A:44-369
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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