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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'Exon' information from database.
3BEQ
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (275 KB)
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(1)
Title
:
NEURAMINIDASE OF A/BREVIG MISSION/1/1918 H1N1 STRAIN
Authors
:
X. Xu, X. Zhu, I. A. Wilson
Date
:
19 Nov 07 (Deposition) - 30 Sep 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
6-Bladed Beta-Propeller, Glycoprotein, Glycosidase, Hydrolase, Membrane, Metal-Binding, Signal-Anchor, Transmembrane, Virion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xu, X. Zhu, R. A. Dwek, J. Stevens, I. A. Wilson
Structural Characterization Of The 1918 Influenza Virus H1N Neuraminidase
J. Virol. V. 82 10493 2008
[
close entry info
]
Hetero Components
(6, 26)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
CA
5
Ligand/Ion
CALCIUM ION
3
GOL
10
Ligand/Ion
GLYCEROL
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC3 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
14: BC7 (SOFTWARE)
15: BC8 (SOFTWARE)
16: BC9 (SOFTWARE)
17: CC1 (SOFTWARE)
18: CC2 (SOFTWARE)
19: CC3 (SOFTWARE)
20: CC4 (SOFTWARE)
21: CC5 (SOFTWARE)
22: CC6 (SOFTWARE)
23: CC7 (SOFTWARE)
24: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:146 , THR A:148 , ILE A:437
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
ASN B:146 , THR B:148 , ILE B:437
BINDING SITE FOR RESIDUE NAG B 2001
03
AC5
SOFTWARE
LYS A:366 , GLU A:375 , ARG A:394 , ILE A:400 , HOH A:3076 , HOH A:3278
BINDING SITE FOR RESIDUE MAN B 2004
04
AC6
SOFTWARE
ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , ASN A:347 , HOH A:3044
BINDING SITE FOR RESIDUE CA A 1
05
AC7
SOFTWARE
ASP A:379 , ASN A:381 , ASP A:387 , SER A:389 , HOH A:3043 , HOH A:3108
BINDING SITE FOR RESIDUE CA A 2
06
AC8
SOFTWARE
ASP B:379 , ASN B:381 , ASP B:387 , SER B:389 , HOH B:3023 , HOH B:3092
BINDING SITE FOR RESIDUE CA B 3
07
AC9
SOFTWARE
ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , ASN B:347 , HOH B:3057
BINDING SITE FOR RESIDUE CA B 4
08
BC1
SOFTWARE
HOH A:3186 , HOH B:3262 , HOH B:3278
BINDING SITE FOR RESIDUE CA A 5
09
BC2
SOFTWARE
GLN A:249 , ALA A:250 , TYR A:252 , LEU A:268 , ASN A:269 , ALA A:270 , PRO A:271 , HOH A:3057 , HOH A:3091 , HOH A:3253 , ASP B:311
BINDING SITE FOR RESIDUE ACT A 3000
10
BC3
SOFTWARE
ARG B:152 , TRP B:178 , HOH B:3119
BINDING SITE FOR RESIDUE ACT B 3001
11
BC4
SOFTWARE
THR A:225 , GLU A:227 , GLU A:277 , HOH A:3115 , HOH A:3324
BINDING SITE FOR RESIDUE ACT A 3002
12
BC5
SOFTWARE
ARG A:152 , TRP A:178 , SER A:179 , HOH A:3273 , HOH A:3383
BINDING SITE FOR RESIDUE ACT A 3003
13
BC6
SOFTWARE
THR B:225 , GLU B:227 , GLU B:277 , HOH B:3038 , HOH B:3105
BINDING SITE FOR RESIDUE ACT B 3004
14
BC7
SOFTWARE
ARG A:224 , GLU A:276 , GLU A:277 , ARG A:292 , ASN A:294 , HOH A:3115 , HOH A:3273
BINDING SITE FOR RESIDUE PO4 A 1000
15
BC8
SOFTWARE
ASN A:170 , SER A:171 , HOH A:3200 , HOH A:3385 , GLU B:165
BINDING SITE FOR RESIDUE GOL A 3004
16
BC9
SOFTWARE
PRO A:93 , ILE A:94 , TYR A:356 , TRP A:361 , HOH A:3151 , HOH A:3303
BINDING SITE FOR RESIDUE GOL A 3005
17
CC1
SOFTWARE
PRO B:93 , ILE B:94 , TYR B:356 , TRP B:361 , TRP B:378 , HOH B:3175 , HOH B:3271
BINDING SITE FOR RESIDUE GOL B 1002
18
CC2
SOFTWARE
SER A:90 , LEU A:91 , ASP A:283 , ARG A:355 , TYR A:356 , ASP A:357 , HOH A:3309
BINDING SITE FOR RESIDUE GOL A 1003
19
CC3
SOFTWARE
ARG B:224 , SER B:246 , GLU B:276 , GLU B:277 , ARG B:292 , TYR B:406 , HOH B:3105 , HOH B:3119 , HOH B:3300
BINDING SITE FOR RESIDUE GOL B 1004
20
CC4
SOFTWARE
GLU A:165 , ASN A:170 , HOH A:3169 , TYR B:169A , ASN B:170 , SER B:171 , HOH B:3254
BINDING SITE FOR RESIDUE GOL A 1005
21
CC5
SOFTWARE
ASP B:283 , MET B:288 , ARG B:355 , HOH B:3019
BINDING SITE FOR RESIDUE GOL B 1006
22
CC6
SOFTWARE
SER B:90 , LEU B:91 , ASP B:283 , ARG B:355 , TYR B:356 , ASP B:357
BINDING SITE FOR RESIDUE GOL B 1007
23
CC7
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:156 , TRP B:178 , HOH B:3283
BINDING SITE FOR RESIDUE GOL B 1008
24
CC8
SOFTWARE
GLY A:331 , THR A:332 , ASP A:387 , SER A:388 , HOH A:3140
BINDING SITE FOR RESIDUE GOL A 1009
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3beqa_ (A:)
1b: SCOP_d3beqb_ (B:)
View:
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Classes
(
)
(
)
Folds
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(
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Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d3beqa_
A:
1b
d3beqb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3beqA00 (A:83-468)
1b: CATH_3beqB00 (B:83-468)
View:
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(
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Architectures
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320. Strain: a/brevig mission/1/1918.
(2)
1a
3beqA00
A:83-468
1b
3beqB00
B:83-468
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
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Chain A
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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