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3BEP
Asym. Unit
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Asym.Unit (141 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
STRUCTURE OF A SLIDING CLAMP ON DNA
Authors
:
R. E. Georgescu, S. S. Kim, O. Yurieva, J. Kuriyan, X. -P. Kong, M. O'Donnell
Date
:
19 Nov 07 (Deposition) - 29 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.92
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta Subunit, Sliding Clamp, E. Coli Polymerase Iii, Dna Complex, Transferase, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. E. Georgescu, S. S. Kim, O. Yurieva, J. Kuriyan, X. -P. Kong, M. O'Donnell
Structure Of A Sliding Clamp On Dna
Cell(Cambridge, Mass. ) V. 132 43 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
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All Hetero Components
1a: N,N'-(DIPROPYL)-TETRAMETHYLINDODIC... (5CYa)
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No.
Name
Count
Type
Full Name
1
5CY
1
Ligand/Ion
N,N'-(DIPROPYL)-TETRAMETHYLINDODICARBOCYANINE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG B:24 , PRO B:25 , THR B:26 , ARG B:137 , MET B:182 , PRO B:183 , LYS B:198 , HOH B:640 , DC C:2 , DG D:24
BINDING SITE FOR RESIDUE 5CY C 111
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3bepa1 (A:1-122)
1b: SCOP_d3bepa2 (A:123-244)
1c: SCOP_d3bepa3 (A:245-366)
1d: SCOP_d3bepb1 (B:1-122)
1e: SCOP_d3bepb2 (B:123-244)
1f: SCOP_d3bepb3 (B:245-366)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase III, beta subunit
(31)
Protein domain
:
DNA polymerase III, beta subunit
(31)
Escherichia coli [TaxId: 562]
(30)
1a
d3bepa1
A:1-122
1b
d3bepa2
A:123-244
1c
d3bepa3
A:245-366
1d
d3bepb1
B:1-122
1e
d3bepb2
B:123-244
1f
d3bepb3
B:245-366
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3bepA01 (A:1-123)
1b: CATH_3bepA02 (A:124-247)
1c: CATH_3bepB02 (B:124-247)
1d: CATH_3bepA03 (A:248-366)
1e: CATH_3bepB03 (B:248-366)
1f: CATH_3bepB01 (B:1-123)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
DNA Polymerase III; Chain A, domain 2
(13)
Homologous Superfamily
:
DNA Polymerase III, subunit A, domain 2
(13)
Escherichia coli. Organism_taxid: 562.
(4)
1a
3bepA01
A:1-123
1b
3bepA02
A:124-247
1c
3bepB02
B:124-247
1d
3bepA03
A:248-366
1e
3bepB03
B:248-366
1f
3bepB01
B:1-123
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Pfam Domains
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Asym.Unit (141 KB)
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