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3BEJ
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
STRUCTURE OF HUMAN FXR IN COMPLEX WITH MFA-1 AND CO-ACTIVATOR PEPTIDE
Authors
:
S. M. Soisson, G Parthasarathy, J. W. Becker
Date
:
19 Nov 07 (Deposition) - 18 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B,E,F (1x)
Keywords
:
Fxr, Bar, Nr1H4, Bile Acid Receptor, Nhr, Nuclear Receptor, Activator, Alternative Splicing, Dna-Binding, Metal-Binding, Nucleus, Repressor, Transcription, Transcription Regulation, Zinc, Zinc-Finger, Acyltransferase, Chromosomal Rearrangement, Phosphoprotein, Polymorphism, Proto-Oncogene, Transferase, Ubl Conjugation, Transcription/Transferase Complex, Transcription Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Soisson, G. Parthasarathy, A. D. Adams, S. Sahoo, A. Sitlani, C. Sparrow, J. Cui, J. W. Becker
Identification Of A Potent Synthetic Fxr Agonist With An Unexpected Mode Of Binding And Activation.
Proc. Natl. Acad. Sci. Usa V. 105 5337 2008
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: (8ALPHA,10ALPHA,13ALPHA,17BETA)-17... (MUFa)
1b: (8ALPHA,10ALPHA,13ALPHA,17BETA)-17... (MUFb)
2a: YTTRIUM (III) ION (YT3a)
2b: YTTRIUM (III) ION (YT3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MUF
2
Ligand/Ion
(8ALPHA,10ALPHA,13ALPHA,17BETA)-17-[(4-HYDROXYPHENYL)CARBONYL]ANDROSTA-3,5-DIENE-3-CARBOXYLIC ACID
2
YT3
2
Ligand/Ion
YTTRIUM (III) ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:359 , GLU A:360 , HOH A:474 , HOH A:475 , HOH A:499 , HOH A:514 , HOH A:603 , HOH B:734
BINDING SITE FOR RESIDUE YT3 A 1
2
AC2
SOFTWARE
HOH A:603 , ASP B:359 , GLU B:360 , HOH B:569 , HOH B:576 , HOH B:590 , HOH B:734 , HOH B:765
BINDING SITE FOR RESIDUE YT3 B 2
3
AC3
SOFTWARE
MET A:265 , PHE A:284 , LEU A:287 , THR A:288 , MET A:290 , MET A:328 , ARG A:331 , SER A:332 , ILE A:335 , LEU A:348 , HIS A:447 , TRP A:454 , PHE A:461 , TRP A:469 , HOH A:485 , HOH A:508 , HOH A:570
BINDING SITE FOR RESIDUE MUF A 473
4
AC4
SOFTWARE
MET B:265 , PHE B:284 , LEU B:287 , THR B:288 , MET B:328 , PHE B:329 , ARG B:331 , SER B:332 , ILE B:335 , HIS B:447 , MET B:450 , TRP B:454 , PHE B:461 , TRP B:469 , HOH B:595 , HOH B:623 , HOH B:733
BINDING SITE FOR RESIDUE MUF B 1
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019772 (E685A, chain E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019772
E
685
A
NCOA1_HUMAN
Polymorphism
1049021
E/F
E
685
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(1, 2)
Info
All Exons
Exon 1.15a (E:685-695 | F:684-695)
View:
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Label:
All Exon Boundaries
1: Boundary 1.14/1.15a
2: Boundary 1.15a/1.16a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5c
ENST00000348332
5c
ENSE00001412482
chr2:
24807346-24807429
84
NCOA1_HUMAN
-
0
0
-
-
1.6b
ENST00000348332
6b
ENSE00001353786
chr2:
24866835-24866991
157
NCOA1_HUMAN
-
0
0
-
-
1.7a
ENST00000348332
7a
ENSE00002170964
chr2:
24881530-24881635
106
NCOA1_HUMAN
1-30
30
0
-
-
1.8
ENST00000348332
8
ENSE00001070983
chr2:
24888618-24888784
167
NCOA1_HUMAN
30-86
57
0
-
-
1.9
ENST00000348332
9
ENSE00001781523
chr2:
24896235-24896332
98
NCOA1_HUMAN
86-118
33
0
-
-
1.10
ENST00000348332
10
ENSE00001796214
chr2:
24905820-24905997
178
NCOA1_HUMAN
119-178
60
0
-
-
1.11
ENST00000348332
11
ENSE00001070993
chr2:
24914350-24914529
180
NCOA1_HUMAN
178-238
61
0
-
-
1.12
ENST00000348332
12
ENSE00001070995
chr2:
24916121-24916216
96
NCOA1_HUMAN
238-270
33
0
-
-
1.13
ENST00000348332
13
ENSE00001070992
chr2:
24920527-24920667
141
NCOA1_HUMAN
270-317
48
0
-
-
1.14
ENST00000348332
14
ENSE00001071000
chr2:
24927955-24928102
148
NCOA1_HUMAN
317-366
50
0
-
-
1.15a
ENST00000348332
15a
ENSE00001070985
chr2:
24929437-24930757
1321
NCOA1_HUMAN
366-806
441
2
E:685-695
F:684-695
11
12
1.16a
ENST00000348332
16a
ENSE00000808887
chr2:
24933800-24933980
181
NCOA1_HUMAN
807-867
61
0
-
-
1.17
ENST00000348332
17
ENSE00000808888
chr2:
24949458-24949575
118
NCOA1_HUMAN
867-906
40
0
-
-
1.18
ENST00000348332
18
ENSE00000808889
chr2:
24951177-24951345
169
NCOA1_HUMAN
906-962
57
0
-
-
1.19
ENST00000348332
19
ENSE00000808890
chr2:
24952370-24952684
315
NCOA1_HUMAN
963-1067
105
0
-
-
1.20
ENST00000348332
20
ENSE00000726392
chr2:
24962301-24962402
102
NCOA1_HUMAN
1068-1101
34
0
-
-
1.21
ENST00000348332
21
ENSE00000726395
chr2:
24964653-24965055
403
NCOA1_HUMAN
1102-1236
135
0
-
-
1.22
ENST00000348332
22
ENSE00000808891
chr2:
24974851-24975025
175
NCOA1_HUMAN
1236-1294
59
0
-
-
1.23
ENST00000348332
23
ENSE00000726401
chr2:
24980842-24981025
184
NCOA1_HUMAN
1294-1355
62
0
-
-
1.24
ENST00000348332
24
ENSE00000726404
chr2:
24985556-24985645
90
NCOA1_HUMAN
1356-1385
30
0
-
-
1.26b
ENST00000348332
26b
ENSE00001797482
chr2:
24991090-24993571
2482
NCOA1_HUMAN
1386-1441
56
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3beja_ (A:)
1b: SCOP_d3bejb_ (B:)
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Classes
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d3beja_
A:
1b
d3bejb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3bejB00 (B:244-471)
1b: CATH_3bejA00 (A:245-471)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
3bejB00
B:244-471
1b
3bejA00
A:245-471
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Backbone
Sidechain
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Chain E
Chain F
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