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3BBR
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE IGLUR2 LIGAND BINDING CORE (S1S2J-N775S) IN COMPLEX WITH A DIMERIC POSITIVE MODULATOR AS WELL AS GLUTAMATE AT 2.25 A RESOLUTION
Authors
:
J. S. Kastrup, M. Gajhede
Date
:
11 Nov 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ampa Receptor, Glur2, S1S2, Ligand Binding Core, Point Mutation, N775S, Dimeric Positive Modulator, Agonist, Cell Junction, Glycoprotein, Ion Transport, Ionic Channel, Lipoprotein, Membrane, Palmitate, Phosphorylation, Postsynaptic Cell Membrane, Rna Editing, Synapse, Transmembrane, Transport, Membrane Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. H. Kaae, K. Harpsoe, J. S. Kastrup, A. C. Sanz, D. S. Pickering, B. Metzler, R. P. Clausen, M. Gajhede, P. Sauerberg, T. Liljefors, U. Madsen
Structural Proof Of A Dimeric Positive Modulator Bridging Two Identical Ampa Receptor-Binding Sites
Chem. Biol. V. 14 1294 2007
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: N,N'-[BIPHENYL-4,4'-DIYLDI(2R)PROP... (BHYa)
2a: CHLORIDE ION (CLa)
3a: GLUTAMIC ACID (GLUa)
3b: GLUTAMIC ACID (GLUb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BHY
1
Ligand/Ion
N,N'-[BIPHENYL-4,4'-DIYLDI(2R)PROPANE-2,1-DIYL]DIMETHANESULFONAMIDE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
4
GOL
2
Ligand/Ion
GLYCEROL
5
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:148 , TRP B:159 , ARG B:163
BINDING SITE FOR RESIDUE SO4 B 264
02
AC2
SOFTWARE
ASP B:139 , SER B:140 , LYS B:144 , ARG B:148 , HOH B:297 , HOH B:379 , HOH B:399 , HOH B:442
BINDING SITE FOR RESIDUE SO4 B 265
03
AC3
SOFTWARE
SER A:140 , LYS A:144 , ARG A:148 , HOH A:295 , HOH A:312 , HOH A:366
BINDING SITE FOR RESIDUE SO4 A 264
04
AC4
SOFTWARE
HIS B:23 , ARG B:31 , HOH B:285 , HOH B:523 , HOH B:534
BINDING SITE FOR RESIDUE SO4 B 266
05
AC5
SOFTWARE
ARG A:31 , HOH A:294 , HOH A:318 , HOH A:328 , HOH A:461 , LYS B:183
BINDING SITE FOR RESIDUE SO4 A 265
06
AC6
SOFTWARE
ASN A:22
BINDING SITE FOR RESIDUE CL A 266
07
AC7
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , LEU A:138 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , TYR A:220 , HOH A:281 , HOH A:282 , HOH A:304
BINDING SITE FOR RESIDUE GLU A 267
08
AC8
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , TYR B:220 , HOH B:276 , HOH B:287 , HOH B:298
BINDING SITE FOR RESIDUE GLU B 267
09
AC9
SOFTWARE
LYS A:104 , PRO A:105 , MET A:107 , SER A:108 , SER A:217 , LYS A:218 , GLY A:219 , LEU A:239 , HOH A:416 , HOH A:437 , LYS B:104 , PRO B:105 , MET B:107 , SER B:108 , SER B:217 , LYS B:218 , GLY B:219 , LEU B:239 , SER B:242
BINDING SITE FOR RESIDUE BHY A 268
10
BC1
SOFTWARE
TYR B:161 , SER B:164 , ALA B:165 , GLU B:166 , HOH B:425 , HOH B:457
BINDING SITE FOR RESIDUE GOL B 268
11
BC2
SOFTWARE
ARG A:148 , TRP A:159 , ARG A:163
BINDING SITE FOR RESIDUE GOL A 269
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3bbra_ (A:)
1b: SCOP_d3bbrb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Glutamate receptor ligand binding core
(127)
Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
(115)
1a
d3bbra_
A:
1b
d3bbrb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3bbrB01 (B:4-109,B:219-258)
1b: CATH_3bbrA01 (A:4-109,A:219-256)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rat (Rattus norvegicus)
(37)
1a
3bbrB01
B:4-109,B:219-258
1b
3bbrA01
A:4-109,A:219-256
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Pfam Domains
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Asymmetric Unit 1
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