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3BA6
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
STRUCTURE OF THE CA2E1P PHOSPHOENZYME INTERMEDIATE OF THE SERCA CA2+-ATPASE
Authors
:
M. Picard, A. M. L. Winther, C. Olesen, C. Gyrup, J. P. Morth, C. Oxvig, J. V. Moller, P. Nissen
Date
:
07 Nov 07 (Deposition) - 18 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Membrane Protein, P-Type Atpase, Phosphoenzyme, Aspartyl- Phosphoanhydride, Alternative Splicing, Atp-Binding, Calcium, Calcium Transport, Endoplasmic Reticulum, Hydrolase, Ion Transport, Magnesium, Metal-Binding, Nucleotide-Binding, Phosphorylation, Sarcoplasmic Reticulum, Transmembrane, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Olesen, M. Picard, A. M. Winther, C. Gyrup, J. P. Morth, C. Oxvig, J. V. Moller, P. Nissen
The Structural Basis Of Calcium Transport By The Calcium Pump.
Nature V. 450 1036 2007
(for further references see the
PDB file header
)
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: AMP PHOSPHORAMIDATE (AN2a)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: POTASSIUM ION (Ka)
4a: ASPARTYL PHOSPHATE (PHDa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AN2
1
Ligand/Ion
AMP PHOSPHORAMIDATE
2
CA
3
Ligand/Ion
CALCIUM ION
3
K
1
Ligand/Ion
POTASSIUM ION
4
PHD
1
Mod. Amino Acid
ASPARTYL PHOSPHATE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:304 , ALA A:305 , ILE A:307 , GLU A:309 , ASN A:796 , ASP A:800
BINDING SITE FOR RESIDUE CA A 1003
2
AC2
SOFTWARE
ASN A:768 , GLU A:771 , THR A:799 , ASP A:800 , GLU A:908
BINDING SITE FOR RESIDUE CA A 1004
3
AC3
SOFTWARE
PHD A:351 , THR A:353 , ASP A:703 , HOH A:1008 , HOH A:1042 , HOH A:1044
BINDING SITE FOR RESIDUE CA A 1005
4
AC4
SOFTWARE
LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732
BINDING SITE FOR RESIDUE K A 1006
5
AC5
SOFTWARE
PHD A:351 , THR A:353 , GLU A:442 , PHE A:487 , ARG A:489 , MET A:494 , LYS A:515 , GLY A:516 , ALA A:517 , ARG A:560 , LEU A:562 , THR A:625 , GLY A:626 , ASP A:627 , ARG A:678 , HOH A:1044 , HOH A:1047 , HOH A:1049 , HOH A:1050
BINDING SITE FOR RESIDUE AN2 A 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:351-357)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT2A1_RABIT
351-357
1
A:351-357
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d3ba6a2 (A:125-239)
2a: SCOP_d3ba6a4 (A:361-599)
3a: SCOP_d3ba6a3 (A:344-360,A:600-750)
4a: SCOP_d3ba6a1 (A:1-124,A:240-343,A:751-994)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Calcium ATPase, transduction domain A
(37)
Family
:
Calcium ATPase, transduction domain A
(37)
Protein domain
:
Calcium ATPase, transduction domain A
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
1a
d3ba6a2
A:125-239
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Superfamily
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Family
:
Metal cation-transporting ATPase, ATP-binding domain N
(45)
Protein domain
:
Calcium ATPase
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
2a
d3ba6a4
A:361-599
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Meta-cation ATPase, catalytic domain P
(38)
Protein domain
:
Calcium ATPase, catalytic domain P
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
3a
d3ba6a3
A:344-360,A:600-750
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Calcium ATPase, transmembrane domain M
(37)
Superfamily
:
Calcium ATPase, transmembrane domain M
(37)
Family
:
Calcium ATPase, transmembrane domain M
(37)
Protein domain
:
Calcium ATPase, transmembrane domain M
(37)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(37)
4a
d3ba6a1
A:1-124,A:240-343,A:751-994
[
close SCOP info
]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_3ba6A04 (A:359-602)
2a: CATH_3ba6A03 (A:346-358,A:603-745)
3a: CATH_3ba6A02 (A:55-120,A:243-345,A:746-994)
4a: CATH_3ba6A01 (A:1-54,A:121-242)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Rabbit (Oryctolagus cuniculus)
(31)
1a
3ba6A04
A:359-602
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Rabbit (Oryctolagus cuniculus)
(31)
2a
3ba6A03
A:346-358,A:603-745
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Calcium-transporting ATPase, transmembrane domain
(36)
Homologous Superfamily
:
Calcium-transporting ATPase, transmembrane domain
(36)
Rabbit (Oryctolagus cuniculus)
(31)
3a
3ba6A02
A:55-120,A:243-345,A:746-994
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Rabbit (Oryctolagus cuniculus)
(31)
4a
3ba6A01
A:1-54,A:121-242
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (165 KB)
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