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3BA3
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-LIKE PROTEIN (NP_783940.1) FROM LACTOBACILLUS PLANTARUM AT 1.55 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
07 Nov 07 (Deposition) - 20 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Np_783940. 1, Pyridoxamine 5'-Phosphate Oxidase-Like Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase
(Keyword Search:
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Pyridoxamine 5'-Phosphate Oxidase-Like Protein (Np_783940. 1) From Lactobacillus Plantarum At 1. 55 Resolution
To Be Published
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
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No.
Name
Count
Type
Full Name
1
EDO
10
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:133 , VAL A:134 , GLY A:135 , LYS A:138 , EDO A:149 , LYS B:138 , HOH B:180 , HOH B:383
BINDING SITE FOR RESIDUE SO4 A 145
02
AC2
SOFTWARE
ASN A:14 , LYS A:15 , PRO A:105 , HOH A:169 , HOH A:191 , HOH A:197 , HOH A:222 , HOH A:274 , HOH A:318 , HOH B:297
BINDING SITE FOR RESIDUE SO4 A 146
03
AC3
SOFTWARE
ASP B:112 , ALA B:113 , ILE B:114 , GLY B:115 , SER B:116 , HOH B:217 , HOH B:312 , HOH B:327
BINDING SITE FOR RESIDUE EDO B 145
04
AC4
SOFTWARE
ASP A:112 , ALA A:113 , ILE A:114 , GLY A:115 , SER A:116 , HOH A:236 , HOH A:283
BINDING SITE FOR RESIDUE EDO A 147
05
AC5
SOFTWARE
TYR B:36 , LYS B:91 , ASP B:95 , EDO B:148
BINDING SITE FOR RESIDUE EDO B 146
06
AC6
SOFTWARE
LYS B:15 , ASN B:32 , HOH B:289 , HOH B:291 , HOH B:315
BINDING SITE FOR RESIDUE EDO B 147
07
AC7
SOFTWARE
LYS A:15 , ILE A:30 , HOH A:169 , HOH A:195 , ASN B:76
BINDING SITE FOR RESIDUE EDO A 148
08
AC8
SOFTWARE
LYS A:29 , GLY A:135 , GLY A:136 , SO4 A:145
BINDING SITE FOR RESIDUE EDO A 149
09
AC9
SOFTWARE
TYR A:36 , LYS A:91 , ASP A:95 , HOH A:293 , HOH A:300
BINDING SITE FOR RESIDUE EDO A 150
10
BC1
SOFTWARE
LEU A:101 , GLU A:102 , THR A:103 , PRO A:105 , HOH A:207 , HOH A:301
BINDING SITE FOR RESIDUE EDO A 151
11
BC2
SOFTWARE
ALA B:38 , GLN B:39 , TYR B:44 , EDO B:146 , HOH B:336
BINDING SITE FOR RESIDUE EDO B 148
12
BC3
SOFTWARE
HOH A:205 , LYS B:29 , GLU B:137 , GLN B:139
BINDING SITE FOR RESIDUE EDO A 152
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ba3B00 (B:2-144)
1b: CATH_3ba3A00 (A:2-143)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pnp Oxidase; Chain A
(68)
Homologous Superfamily
:
Electron Transport, Fmn-binding Protein; Chain A
(67)
Lactobacillus plantarum wcfs1. Organism_taxid: 220668. Strain: wcfs1,ncimb 8826.
(1)
1a
3ba3B00
B:2-144
1b
3ba3A00
A:2-143
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Pfam Domains
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Asymmetric Unit 1
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