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Getting 'Exon' information from database.
3B9M
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (99 KB)
(using Jmol or JSmol)
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(1)
Title
:
HUMAN SERUM ALBUMIN COMPLEXED WITH MYRISTATE, 3'-AZIDO-3'-DEOXYTHYMIDINE (AZT) AND SALICYLIC ACID
Authors
:
L. Zhu, F. Yang, L. Chen, E. J. Meehan, M. Huang
Date
:
05 Nov 07 (Deposition) - 27 May 08 (Release) - 18 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Ligands Complex, Cleavage On Pair Of Basic Residues, Disease Mutation, Glycation, Glycoprotein, Lipid-Binding, Metal-Binding, Secreted, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Zhu, F. Yang, L. Chen, E. J. Meehan, M. Huang
A New Drug Binding Subsite On Human Serum Albumin And Drug-Drug Interaction Studied By X-Ray Crystallography
J. Struct. Biol. V. 162 40 2008
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 9)
Info
All Hetero Components
1a: 3'-AZIDO-3'-DEOXYTHYMIDINE (AZZa)
2a: MYRISTIC ACID (MYRa)
2b: MYRISTIC ACID (MYRb)
2c: MYRISTIC ACID (MYRc)
2d: MYRISTIC ACID (MYRd)
2e: MYRISTIC ACID (MYRe)
2f: MYRISTIC ACID (MYRf)
3a: 2-HYDROXYBENZOIC ACID (SALa)
3b: 2-HYDROXYBENZOIC ACID (SALb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AZZ
1
Ligand/Ion
3'-AZIDO-3'-DEOXYTHYMIDINE
2
MYR
6
Ligand/Ion
MYRISTIC ACID
3
SAL
2
Ligand/Ion
2-HYDROXYBENZOIC ACID
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:115 , ARG A:117 , MET A:123 , TYR A:138 , LEU A:139 , ILE A:142 , LEU A:154 , TYR A:161 , ARG A:186
BINDING SITE FOR RESIDUE MYR A 1001
2
AC2
SOFTWARE
LEU A:22 , PHE A:27 , PHE A:70 , TYR A:150 , LEU A:251 , ALA A:254 , ARG A:257 , LEU A:283 , SER A:287
BINDING SITE FOR RESIDUE MYR A 1002
3
AC3
SOFTWARE
LEU A:345 , ARG A:348 , ILE A:388 , PHE A:403 , LEU A:430 , GLY A:431 , GLY A:434 , ARG A:485 , PRO A:486
BINDING SITE FOR RESIDUE MYR A 1003
4
AC4
SOFTWARE
ARG A:410 , TYR A:411 , LEU A:460 , PHE A:488 , SER A:489
BINDING SITE FOR RESIDUE MYR A 1004
5
AC5
SOFTWARE
TYR A:401 , LYS A:525 , PHE A:551 , SER A:579
BINDING SITE FOR RESIDUE MYR A 1005
6
AC6
SOFTWARE
ARG A:209 , ASP A:324 , GLY A:328
BINDING SITE FOR RESIDUE MYR A 1006
7
AC7
SOFTWARE
GLU A:153 , GLN A:196 , LYS A:199 , HIS A:242 , CYS A:245 , ARG A:257
BINDING SITE FOR RESIDUE AZZ A 1009
8
AC8
SOFTWARE
HIS A:146 , TYR A:161 , ARG A:186 , GLY A:189
BINDING SITE FOR RESIDUE SAL A 1200
[
close Site info
]
SAPs(SNPs)/Variants
(58, 58)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_000505 (H3Q, chain A, )
02: VAR_000506 (H3Y, chain A, )
03: VAR_010657 (F49Y, chain A, )
04: VAR_000507 (E60K, chain A, )
05: VAR_000508 (D63N, chain A, )
06: VAR_013011 (L66P, chain A, )
07: VAR_000509 (E82K, chain A, )
08: VAR_014290 (E97G, chain A, )
09: VAR_000510 (R114G, chain A, )
10: VAR_000511 (E119K, chain A, )
11: VAR_013012 (V122E, chain A, )
12: VAR_000512 (H128R, chain A, )
13: VAR_000513 (C177F, chain A, )
14: VAR_014291 (A191T, chain A, )
15: VAR_014292 (A191V, chain A, )
16: VAR_014293 (Q196L, chain A, )
17: VAR_000514 (R218H, chain A, )
18: VAR_013013 (R218P, chain A, )
19: VAR_000515 (K225Q, chain A, )
20: VAR_000516 (K240E, chain A, )
21: VAR_000517 (Q268R, chain A, )
22: VAR_000518 (D269G, chain A, )
23: VAR_000519 (K276N, chain A, )
24: VAR_000520 (K313N, chain A, )
25: VAR_013014 (D314G, chain A, )
26: VAR_013015 (D314V, chain A, )
27: VAR_000521 (N318K, chain A, )
28: VAR_000522 (A320T, chain A, )
29: VAR_000523 (E321K, chain A, )
30: VAR_000524 (E333K, chain A, )
31: VAR_000525 (E354K, chain A, )
32: VAR_000526 (E358K, chain A, )
33: VAR_013016 (K359N, chain A, )
34: VAR_000527 (D365H, chain A, )
35: VAR_000528 (D365V, chain A, )
36: VAR_000529 (K372E, chain A, )
37: VAR_000530 (D375N, chain A, )
38: VAR_000531 (E376K, chain A, )
39: VAR_000532 (E376Q, chain A, )
40: VAR_000533 (E382K, chain A, )
41: VAR_014294 (E396K, chain A, )
42: VAR_013017 (R410C, chain A, )
43: VAR_014295 (K466E, chain A, )
44: VAR_000534 (E479K, chain A, )
45: VAR_000535 (D494N, chain A, )
46: VAR_000536 (E501K, chain A, )
47: VAR_000537 (E505K, chain A, )
48: VAR_013018 (V533M, chain A, )
49: VAR_000538 (K536E, chain A, )
50: VAR_000539 (K541E, chain A, )
51: VAR_000541 (D550A, chain A, )
52: VAR_000540 (D550G, chain A, )
53: VAR_013019 (K560E, chain A, )
54: VAR_000542 (D563N, chain A, )
55: VAR_000543 (E565K, chain A, )
56: VAR_000544 (E570K, chain A, )
57: VAR_000545 (K573E, chain A, )
58: VAR_000546 (K574N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_000505
H
27
Q
ALBU_HUMAN
Unclassified
---
A
H
3
Q
02
UniProt
VAR_000506
H
27
Y
ALBU_HUMAN
Unclassified
---
A
H
3
Y
03
UniProt
VAR_010657
F
73
Y
ALBU_HUMAN
Polymorphism
---
A
F
49
Y
04
UniProt
VAR_000507
E
84
K
ALBU_HUMAN
Unclassified
---
A
E
60
K
05
UniProt
VAR_000508
D
87
N
ALBU_HUMAN
Unclassified
---
A
D
63
N
06
UniProt
VAR_013011
L
90
P
ALBU_HUMAN
Unclassified
---
A
L
66
P
07
UniProt
VAR_000509
E
106
K
ALBU_HUMAN
Unclassified
---
A
E
82
K
08
UniProt
VAR_014290
E
121
G
ALBU_HUMAN
Polymorphism
---
A
E
97
G
09
UniProt
VAR_000510
R
138
G
ALBU_HUMAN
Unclassified
---
A
R
114
G
10
UniProt
VAR_000511
E
143
K
ALBU_HUMAN
Unclassified
---
A
E
119
K
11
UniProt
VAR_013012
V
146
E
ALBU_HUMAN
Unclassified
---
A
V
122
E
12
UniProt
VAR_000512
H
152
R
ALBU_HUMAN
Unclassified
---
A
H
128
R
13
UniProt
VAR_000513
C
201
F
ALBU_HUMAN
Unclassified
---
A
C
177
F
14
UniProt
VAR_014291
A
215
T
ALBU_HUMAN
Polymorphism
3210154
A
A
191
T
15
UniProt
VAR_014292
A
215
V
ALBU_HUMAN
Polymorphism
3204504
A
A
191
V
16
UniProt
VAR_014293
Q
220
L
ALBU_HUMAN
Polymorphism
3210163
A
Q
196
L
17
UniProt
VAR_000514
R
242
H
ALBU_HUMAN
Unclassified
---
A
R
218
H
18
UniProt
VAR_013013
R
242
P
ALBU_HUMAN
Unclassified
---
A
R
218
P
19
UniProt
VAR_000515
K
249
Q
ALBU_HUMAN
Unclassified
---
A
K
225
Q
20
UniProt
VAR_000516
K
264
E
ALBU_HUMAN
Unclassified
---
A
K
240
E
21
UniProt
VAR_000517
Q
292
R
ALBU_HUMAN
Unclassified
---
A
Q
268
R
22
UniProt
VAR_000518
D
293
G
ALBU_HUMAN
Unclassified
---
A
D
269
G
23
UniProt
VAR_000519
K
300
N
ALBU_HUMAN
Unclassified
---
A
K
276
N
24
UniProt
VAR_000520
K
337
N
ALBU_HUMAN
Unclassified
---
A
K
313
N
25
UniProt
VAR_013014
D
338
G
ALBU_HUMAN
Unclassified
---
A
D
314
G
26
UniProt
VAR_013015
D
338
V
ALBU_HUMAN
Unclassified
---
A
D
314
V
27
UniProt
VAR_000521
N
342
K
ALBU_HUMAN
Unclassified
---
A
N
318
K
28
UniProt
VAR_000522
A
344
T
ALBU_HUMAN
Unclassified
---
A
A
320
T
29
UniProt
VAR_000523
E
345
K
ALBU_HUMAN
Unclassified
---
A
E
321
K
30
UniProt
VAR_000524
E
357
K
ALBU_HUMAN
Unclassified
---
A
E
333
K
31
UniProt
VAR_000525
E
378
K
ALBU_HUMAN
Unclassified
---
A
E
354
K
32
UniProt
VAR_000526
E
382
K
ALBU_HUMAN
Unclassified
---
A
E
358
K
33
UniProt
VAR_013016
K
383
N
ALBU_HUMAN
Unclassified
---
A
K
359
N
34
UniProt
VAR_000527
D
389
H
ALBU_HUMAN
Unclassified
---
A
D
365
H
35
UniProt
VAR_000528
D
389
V
ALBU_HUMAN
Unclassified
---
A
D
365
V
36
UniProt
VAR_000529
K
396
E
ALBU_HUMAN
Unclassified
---
A
K
372
E
37
UniProt
VAR_000530
D
399
N
ALBU_HUMAN
Unclassified
---
A
D
375
N
38
UniProt
VAR_000531
E
400
K
ALBU_HUMAN
Unclassified
---
A
E
376
K
39
UniProt
VAR_000532
E
400
Q
ALBU_HUMAN
Unclassified
---
A
E
376
Q
40
UniProt
VAR_000533
E
406
K
ALBU_HUMAN
Unclassified
---
A
E
382
K
41
UniProt
VAR_014294
E
420
K
ALBU_HUMAN
Polymorphism
---
A
E
396
K
42
UniProt
VAR_013017
R
434
C
ALBU_HUMAN
Unclassified
---
A
R
410
C
43
UniProt
VAR_014295
K
490
E
ALBU_HUMAN
Polymorphism
1063469
A
K
466
E
44
UniProt
VAR_000534
E
503
K
ALBU_HUMAN
Unclassified
---
A
E
479
K
45
UniProt
VAR_000535
D
518
N
ALBU_HUMAN
Unclassified
---
A
D
494
N
46
UniProt
VAR_000536
E
525
K
ALBU_HUMAN
Unclassified
---
A
E
501
K
47
UniProt
VAR_000537
E
529
K
ALBU_HUMAN
Unclassified
---
A
E
505
K
48
UniProt
VAR_013018
V
557
M
ALBU_HUMAN
Polymorphism
78284052
A
V
533
M
49
UniProt
VAR_000538
K
560
E
ALBU_HUMAN
Unclassified
---
A
K
536
E
50
UniProt
VAR_000539
K
565
E
ALBU_HUMAN
Unclassified
---
A
K
541
E
51
UniProt
VAR_000541
D
574
A
ALBU_HUMAN
Unclassified
---
A
D
550
A
52
UniProt
VAR_000540
D
574
G
ALBU_HUMAN
Unclassified
---
A
D
550
G
53
UniProt
VAR_013019
K
584
E
ALBU_HUMAN
Unclassified
---
A
K
560
E
54
UniProt
VAR_000542
D
587
N
ALBU_HUMAN
Unclassified
---
A
D
563
N
55
UniProt
VAR_000543
E
589
K
ALBU_HUMAN
Unclassified
---
A
E
565
K
56
UniProt
VAR_000544
E
594
K
ALBU_HUMAN
Unclassified
---
A
E
570
K
57
UniProt
VAR_000545
K
597
E
ALBU_HUMAN
Unclassified
---
A
K
573
E
58
UniProt
VAR_000546
K
598
N
ALBU_HUMAN
Unclassified
---
A
K
574
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: ALBUMIN_2 (-|A:187-379|A:380-577)
2: ALBUMIN_1 (A:161-185|A:353-377|A:551-575)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALBUMIN_2
PS51438
Albumin domain profile.
ALBU_HUMAN
19-210
211-403
404-601
2
-
A:187-379
A:380-577
2
ALBUMIN_1
PS00212
Albumin domain signature.
ALBU_HUMAN
185-209
377-401
575-599
3
A:161-185
A:353-377
A:551-575
[
close PROSITE info
]
Exons
(14, 14)
Info
All Exons
Exon 1.2a (A:3-3)
Exon 1.3a (A:3-22)
Exon 1.4b (A:22-66)
Exon 1.5a (A:67-137)
Exon 1.7d (A:137-181)
Exon 1.8a (A:182-214)
Exon 1.9a (A:214-257)
Exon 1.10b (A:258-329)
Exon 1.11a (A:329-373)
Exon 1.12 (A:374-406)
Exon 1.13b (A:406-452)
Exon 1.14b (A:453-527)
Exon 1.16b (A:527-571)
Exon 1.18a (A:572-584)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2a
02: Boundary 1.2a/1.3a
03: Boundary 1.3a/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.7d
06: Boundary 1.7d/1.8a
07: Boundary 1.8a/1.9a
08: Boundary 1.9a/1.10b
09: Boundary 1.10b/1.11a
10: Boundary 1.11a/1.12
11: Boundary 1.12/1.13b
12: Boundary 1.13b/1.14b
13: Boundary 1.14b/1.16b
14: Boundary 1.16b/1.18a
15: Boundary 1.18a/1.20j
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000295897
2a
ENSE00002075693
chr4:
74269956-74270123
168
ALBU_HUMAN
1-27
27
1
A:3-3
1
1.3a
ENST00000295897
3a
ENSE00001076782
chr4:
74270833-74270890
58
ALBU_HUMAN
27-46
20
1
A:3-22
20
1.4b
ENST00000295897
4b
ENSE00001076799
chr4:
74272346-74272478
133
ALBU_HUMAN
46-90
45
1
A:22-66
45
1.5a
ENST00000295897
5a
ENSE00001076811
chr4:
74274311-74274522
212
ALBU_HUMAN
91-161
71
1
A:67-137
71
1.7d
ENST00000295897
7d
ENSE00001076808
chr4:
74275072-74275204
133
ALBU_HUMAN
161-205
45
1
A:137-181
45
1.8a
ENST00000295897
8a
ENSE00001076797
chr4:
74276029-74276126
98
ALBU_HUMAN
206-238
33
1
A:182-214
33
1.9a
ENST00000295897
9a
ENSE00001076788
chr4:
74277713-74277842
130
ALBU_HUMAN
238-281
44
1
A:214-257
44
1.10b
ENST00000295897
10b
ENSE00001076792
chr4:
74279137-74279351
215
ALBU_HUMAN
282-353
72
1
A:258-329
72
1.11a
ENST00000295897
11a
ENSE00001076805
chr4:
74280752-74280884
133
ALBU_HUMAN
353-397
45
1
A:329-373
45
1.12
ENST00000295897
12
ENSE00001076781
chr4:
74281973-74282070
98
ALBU_HUMAN
398-430
33
1
A:374-406
33
1.13b
ENST00000295897
13b
ENSE00001076796
chr4:
74283248-74283386
139
ALBU_HUMAN
430-476
47
1
A:406-452
47
1.14b
ENST00000295897
14b
ENSE00001076790
chr4:
74283805-74284028
224
ALBU_HUMAN
477-551
75
1
A:453-527
75
1.16b
ENST00000295897
16b
ENSE00001076802
chr4:
74285224-74285356
133
ALBU_HUMAN
551-595
45
1
A:527-571
45
1.18a
ENST00000295897
18a
ENSE00001076795
chr4:
74285971-74286038
68
ALBU_HUMAN
596-609
14
1
A:572-584
13
1.20j
ENST00000295897
20j
ENSE00001823230
chr4:
74286809-74287129
321
ALBU_HUMAN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3b9ma1 (A:197-388)
1b: SCOP_d3b9ma2 (A:389-584)
1c: SCOP_d3b9ma3 (A:3-196)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Serum albumin-like
(99)
Superfamily
:
Serum albumin-like
(99)
Family
:
Serum albumin-like
(75)
Protein domain
:
Serum albumin
(69)
Human (Homo sapiens) [TaxId: 9606]
(69)
1a
d3b9ma1
A:197-388
1b
d3b9ma2
A:389-584
1c
d3b9ma3
A:3-196
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3b9mA03 (A:205-296)
1b: CATH_3b9mA05 (A:383-494)
1c: CATH_3b9mA02 (A:108-197)
1d: CATH_3b9mA04 (A:297-382)
1e: CATH_3b9mA01 (A:3-107)
1f: CATH_3b9mA06 (A:495-572)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Serum Albumin; Chain A, Domain 1
(74)
Homologous Superfamily
:
[code=1.10.246.10, no name defined]
(60)
Homo sapiens. Human
(2)
1a
3b9mA03
A:205-296
1b
3b9mA05
A:383-494
1c
3b9mA02
A:108-197
1d
3b9mA04
A:297-382
1e
3b9mA01
A:3-107
1f
3b9mA06
A:495-572
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Asymmetric Unit 1
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