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3B9C
Biol. Unit 1
Info
Asym.Unit (102 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GRP CRD
Authors
:
D. Zhou, H. H. Ge, L. W. Niu, M. K. Teng
Date
:
05 Nov 07 (Deposition) - 18 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Beta Sandwich, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Zhou, H. Ge, J. Sun, Y. Gao, M. Teng, L. Niu
Crystal Structure Of The C-Terminal Conserved Domain Of Human Grp, A Galectin-Related Protein, Reveals A Function Mode Different From Those Of Galectins.
Proteins V. 71 1582 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
2
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:74 , SER A:75 , ALA A:76 , HOH A:175 , THR B:56
BINDING SITE FOR RESIDUE SO4 A 137
02
AC2
SOFTWARE
ARG A:58 , TYR A:79 , PHE A:80 , HOH A:151 , ARG B:58 , TYR B:79 , PHE B:80
BINDING SITE FOR RESIDUE SO4 A 138
03
AC3
SOFTWARE
THR C:56 , ARG D:62 , GLN D:74 , SER D:75 , ALA D:76 , HOH D:194
BINDING SITE FOR RESIDUE SO4 D 137
04
AC4
SOFTWARE
ARG C:58 , TYR C:79 , PHE C:80 , ARG D:58 , TYR D:79 , PHE D:80 , HOH D:152 , HOH D:191
BINDING SITE FOR RESIDUE SO4 D 138
05
AC5
SOFTWARE
ARG C:62 , GLN C:74 , SER C:75 , ALA C:76 , HOH C:222 , HOH C:237 , THR D:56
BINDING SITE FOR RESIDUE SO4 C 137
06
AC6
SOFTWARE
THR A:56 , ARG B:62 , GLN B:74 , SER B:75 , ALA B:76 , HOH B:175 , HOH B:180
BINDING SITE FOR RESIDUE SO4 B 137
07
AC7
SOFTWARE
ARG B:98 , ARG B:100 , HOH B:160 , HOH B:188 , HOH B:204 , ARG D:98 , ARG D:100
BINDING SITE FOR RESIDUE SO4 B 138
08
AC8
SOFTWARE
GLY A:38 , ALA A:120 , HOH A:241 , BME B:139
BINDING SITE FOR RESIDUE BME A 139
09
AC9
SOFTWARE
LYS D:17 , HOH D:172
BINDING SITE FOR RESIDUE BME D 139
10
BC1
SOFTWARE
BME C:138 , CYS D:37 , ALA D:120 , HOH D:219
BINDING SITE FOR RESIDUE BME D 140
11
BC2
SOFTWARE
ALA C:120 , ASP C:122 , BME D:140
BINDING SITE FOR RESIDUE BME C 138
12
BC3
SOFTWARE
TYR C:96 , GLN C:116 , HOH C:178 , HOH C:238
BINDING SITE FOR RESIDUE BME C 139
13
BC4
SOFTWARE
BME A:139 , HOH A:241 , ALA B:120 , ASP B:122 , HOH B:181
BINDING SITE FOR RESIDUE BME B 139
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:4-136,B:4-136,C:4-136,D:4-136)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEGL_HUMAN
40-172
4
A:4-136
B:4-136
C:4-136
D:4-136
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3b9ca_ (A:)
1b: SCOP_d3b9cb_ (B:)
1c: SCOP_d3b9cc_ (C:)
1d: SCOP_d3b9cd_ (D:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3b9ca_
A:
1b
d3b9cb_
B:
1c
d3b9cc_
C:
1d
d3b9cd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (50 KB)
Header - Biol.Unit 3
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