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3B8Y
Biol. Unit 1
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Asym.Unit (104 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PECTATE LYASE PELI FROM ERWINIA CHRYSANTHEMI IN COMPLEX WITH TETRAGALACTURONIC ACID
Authors
:
C. Creze, S. Castang, E. Derivery, R. Haser, V. Shevchik, P. Gouet
Date
:
02 Nov 07 (Deposition) - 29 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pectate Lyase, Pectin, Galacturonic Acid, Erwinia Chrysanthemi, Right-Handed Parallel Beta Helix Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Creze, S. Castang, E. Derivery, R. Haser, N. Hugouvieux-Cotte-Pattat, V. E. Shevchik, P. Gouet
The Crystal Structure Of Pectate Lyase Peli From Soft Rot Pathogen Erwinia Chrysanthemi In Complex With Its Substrate
J. Biol. Chem. V. 283 18260 2008
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ALPHA-D-GALACTOPYRANURONIC ACID (ADAa)
1b: ALPHA-D-GALACTOPYRANURONIC ACID (ADAb)
1c: ALPHA-D-GALACTOPYRANURONIC ACID (ADAc)
1d: ALPHA-D-GALACTOPYRANURONIC ACID (ADAd)
1e: ALPHA-D-GALACTOPYRANURONIC ACID (ADAe)
1f: ALPHA-D-GALACTOPYRANURONIC ACID (ADAf)
1g: ALPHA-D-GALACTOPYRANURONIC ACID (ADAg)
1h: ALPHA-D-GALACTOPYRANURONIC ACID (ADAh)
2a: CALCIUM ION (CAa)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ADA
4
Ligand/Ion
ALPHA-D-GALACTOPYRANURONIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:249 , ARG A:252 , THR A:322
BINDING SITE FOR RESIDUE ADA A 901
2
AC2
SOFTWARE
LYS A:224 , GLN A:227 , ARG A:252 , GLY A:255 , ASP A:256
BINDING SITE FOR RESIDUE ADA A 902
3
AC3
SOFTWARE
ASP A:195 , GLN A:227 , ASN A:229 , CYS A:254 , ASP A:256 , CYS A:257 , LYS A:317
BINDING SITE FOR RESIDUE ADA A 903
4
AC4
SOFTWARE
SER A:258 , LYS A:317
BINDING SITE FOR RESIDUE ADA A 904
5
BC1
SOFTWARE
ASP A:146 , SER A:147 , HIS B:176 , ASP B:178
BINDING SITE FOR RESIDUE ZN B 711
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(0, 0)
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3b8yA02 (A:119-344)
1b: CATH_3b8yB02 (B:119-344)
2a: CATH_3b8yA01 (A:20-118)
2b: CATH_3b8yB01 (B:20-106)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Erwinia chrysanthemi. Organism_taxid: 556.
(6)
1a
3b8yA02
A:119-344
1b
3b8yB02
B:119-344
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Erwinia chrysanthemi. Organism_taxid: 556.
(2)
2a
3b8yA01
A:20-118
2b
3b8yB01
B:20-106
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Pfam Domains
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Asym.Unit (104 KB)
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