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3B8E
Asym. Unit
Info
Asym.Unit (327 KB)
Biol.Unit 1 (161 KB)
Biol.Unit 2 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SODIUM-POTASSIUM PUMP
Authors
:
J. P. Morth, P. B. Pedersen, M. S. Toustrup-Jensen, T. L. M. Soerensen, J. Petersen, J. P. Andersen, B. Vilsen, P. Nissen
Date
:
01 Nov 07 (Deposition) - 18 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C,D,G,H
Biol. Unit 1: A,B,G (1x)
Biol. Unit 2: C,D,H (1x)
Keywords
:
Na+, K+-Atpase, P-Type Atpase, Cation Pump, Membrane Protein, Hydrolase, Atp-Binding, Calcium Transport, Ion Transport, Membrane Potential, Phosphorylation, Magnesium, Metal-Binding, Nucleotide-Binding, Potassium, Potassium Transport, Sodium, Sodium Transport, Sodium/Potassium Transport, Transmembrane, Glycoprotein, Signal-Anchor, Hydrolase/Transport Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Morth, B. P. Pedersen, M. S. Toustrup-Jensen, T. L. Sorensen, J. Petersen, J. P. Andersen, B. Vilsen, P. Nissen
Crystal Structure Of The Sodium-Potassium Pump.
Nature V. 450 1043 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: TETRAFLUOROMAGNESATE(2-) (MF4a)
1b: TETRAFLUOROMAGNESATE(2-) (MF4b)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1a)
3b: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHO... (PC1b)
4a: RUBIDIUM ION (RBa)
4b: RUBIDIUM ION (RBb)
4c: RUBIDIUM ION (RBc)
4d: RUBIDIUM ION (RBd)
4e: RUBIDIUM ION (RBe)
4f: RUBIDIUM ION (RBf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MF4
2
Ligand/Ion
TETRAFLUOROMAGNESATE(2-)
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
PC1
2
Ligand/Ion
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
4
RB
6
Ligand/Ion
RUBIDIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:213 , ASP A:369 , THR A:371 , ASP A:710 , MF4 A:2001
BINDING SITE FOR RESIDUE MG A 2002
02
AC2
SOFTWARE
THR A:772 , SER A:775 , ASN A:776 , GLU A:779 , ASP A:804
BINDING SITE FOR RESIDUE RB A 2003
03
AC3
SOFTWARE
VAL A:322 , ASN A:324 , VAL A:325 , GLU A:327 , ASN A:776 , GLU A:779 , ASP A:804
BINDING SITE FOR RESIDUE RB A 2004
04
AC4
SOFTWARE
ASP A:740
BINDING SITE FOR RESIDUE RB A 2005
05
AC5
SOFTWARE
GLY C:213 , ASP C:369 , THR C:371 , ASP C:710 , MF4 C:2001
BINDING SITE FOR RESIDUE MG C 2002
06
AC6
SOFTWARE
THR C:772 , SER C:775 , ASN C:776 , GLU C:779 , ASP C:804
BINDING SITE FOR RESIDUE RB C 2003
07
AC7
SOFTWARE
VAL C:322 , VAL C:325 , GLU C:327 , ASN C:776 , GLU C:779 , ASP C:804
BINDING SITE FOR RESIDUE RB C 2004
08
AC8
SOFTWARE
ASP C:740
BINDING SITE FOR RESIDUE RB C 2005
09
AC9
SOFTWARE
THR A:212 , GLY A:213 , GLU A:214 , ASP A:369 , LYS A:370 , THR A:371 , VAL A:609 , THR A:610 , GLY A:611 , ASP A:612 , LYS A:691 , ASN A:713 , MG A:2002
BINDING SITE FOR RESIDUE MF4 A 2001
10
BC1
SOFTWARE
THR C:212 , GLY C:213 , GLU C:214 , ASP C:369 , LYS C:370 , THR C:371 , VAL C:609 , THR C:610 , GLY C:611 , ASP C:612 , LYS C:691 , ASN C:713 , MG C:2002
BINDING SITE FOR RESIDUE MF4 C 2001
11
BC2
SOFTWARE
TYR B:43
BINDING SITE FOR RESIDUE PC1 B 1
12
BC3
SOFTWARE
GLY C:848 , TYR D:39 , TYR D:43
BINDING SITE FOR RESIDUE PC1 C 1
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ATPASE_E1_E2 (A:369-375,C:369-375)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_E1_E2
PS00154
E1-E2 ATPases phosphorylation site.
AT1A1_PIG
374-380
2
A:369-375
C:369-375
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(5, 10)
Info
all CATH domains
1a: CATH_3b8eA04 (A:377-587)
1b: CATH_3b8eC04 (C:377-587)
2a: CATH_3b8eA03 (A:364-376,A:588-748)
2b: CATH_3b8eC03 (C:364-376,C:588-748)
3a: CATH_3b8eA02 (A:87-140,A:270-363,A:749-1016)
3b: CATH_3b8eC02 (C:87-140,C:270-363,C:749-1016)
4a: CATH_3b8eB00 (B:28-73)
4b: CATH_3b8eD00 (D:28-73)
5a: CATH_3b8eA01 (A:19-70,A:150-269)
5b: CATH_3b8eC01 (C:19-70,C:150-269)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic domain N
(43)
Pig (Sus scrofa)
(3)
1a
3b8eA04
A:377-587
1b
3b8eC04
C:377-587
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Pig (Sus scrofa)
(2)
2a
3b8eA03
A:364-376,A:588-748
2b
3b8eC03
C:364-376,C:588-748
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Calcium-transporting ATPase, transmembrane domain
(36)
Homologous Superfamily
:
Calcium-transporting ATPase, transmembrane domain
(36)
Pig (Sus scrofa)
(2)
3a
3b8eA02
A:87-140,A:270-363,A:749-1016
3b
3b8eC02
C:87-140,C:270-363,C:749-1016
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
Pig (Sus scrofa)
(1)
4a
3b8eB00
B:28-73
4b
3b8eD00
D:28-73
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Homologous Superfamily
:
Calcium-transporting ATPase, cytoplasmic transduction domain A
(35)
Pig (Sus scrofa)
(2)
5a
3b8eA01
A:19-70,A:150-269
5b
3b8eC01
C:19-70,C:150-269
[
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Pfam Domains
(0, 0)
Info
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Asymmetric Unit 1
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Asym.Unit (327 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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