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3B6Y
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SECOND HIN-200 DOMAIN OF INTERFERON-INDUCIBLE PROTEIN 16
Authors
:
J. C. C. Liao, R. Lam, M. Ravichandran, S. Duan, W. Tempel, N. Y. Chirgadz C. H. Arrowsmith, Northeast Structural Genomics Consortium (Ne
Date
:
29 Oct 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transcription Factor, Ob-Fold, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Dna-Binding, Interferon Induction, Nucleus, Phosphorylation, Repressor, Transcription Regulation, Protein Binding
(Keyword Search:
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Reference
:
J. C. C. Liao, R. Lam, M. Ravichandran, S. Duan, W. Tempel, N. Y. Chirgadze, C. H. Arrowsmith
Crystal Structure Analysis Of The Second Hin Domain Of Ifi16.
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:36 , ASN A:38 , ARG B:68
BINDING SITE FOR RESIDUE SO4 A 197
2
AC2
SOFTWARE
LYS B:24 , THR B:36 , ASN B:38
BINDING SITE FOR RESIDUE SO4 B 197
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029491 (T153S, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029491
T
723
S
IF16_HUMAN
Polymorphism
6940
A/B
T
153
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.13a (A:6-125 | B:7-125)
Exon 1.13e (A:126-189 (gaps) | B:126-189 (gaps...)
Exon 1.14b (A:190-191 | B:190-191)
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All Exon Boundaries
1: Boundary 1.12/1.13a
2: Boundary 1.13a/1.13e
3: Boundary 1.13e/1.14b
4: Boundary 1.14b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4c
ENST00000295809
4c
ENSE00001446388
chr1:
158979712-158979951
240
IF16_HUMAN
-
0
0
-
-
1.5
ENST00000295809
5
ENSE00002197956
chr1:
158984451-158984735
285
IF16_HUMAN
1-89
89
0
-
-
1.6b
ENST00000295809
6b
ENSE00002145190
chr1:
158985662-158985777
116
IF16_HUMAN
89-127
39
0
-
-
1.7b
ENST00000295809
7b
ENSE00001713738
chr1:
158986323-158986490
168
IF16_HUMAN
128-183
56
0
-
-
1.8b
ENST00000295809
8b
ENSE00001756224
chr1:
158988019-158988441
423
IF16_HUMAN
184-324
141
0
-
-
1.9
ENST00000295809
9
ENSE00001745832
chr1:
158990131-158990319
189
IF16_HUMAN
325-387
63
0
-
-
1.10
ENST00000295809
10
ENSE00001775551
chr1:
159002314-159002481
168
IF16_HUMAN
388-443
56
0
-
-
1.11
ENST00000295809
11
ENSE00001604845
chr1:
159015087-159015254
168
IF16_HUMAN
444-499
56
0
-
-
1.12
ENST00000295809
12
ENSE00001647098
chr1:
159019222-159019389
168
IF16_HUMAN
500-555
56
0
-
-
1.13a
ENST00000295809
13a
ENSE00001285404
chr1:
159021469-159021888
420
IF16_HUMAN
556-695
140
2
A:6-125
B:7-125
120
119
1.13e
ENST00000295809
13e
ENSE00001076041
chr1:
159023323-159023514
192
IF16_HUMAN
696-759
64
2
A:126-189 (gaps)
B:126-189 (gaps)
64
64
1.14b
ENST00000295809
14b
ENSE00001285450
chr1:
159024611-159024938
328
IF16_HUMAN
760-785
26
2
A:190-191
B:190-191
2
2
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3b6ya1 (A:6-102)
1b: SCOP_d3b6ya2 (A:103-191)
1c: SCOP_d3b6yb1 (B:7-102)
1d: SCOP_d3b6yb2 (B:103-191)
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
HIN-200/IF120x domain
(5)
Protein domain
:
Gamma-interferon-inducible protein Ifi-16
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3b6ya1
A:6-102
1b
d3b6ya2
A:103-191
1c
d3b6yb1
B:7-102
1d
d3b6yb2
B:103-191
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3b6yA01 (A:6-101)
1b: CATH_3b6yB01 (B:7-101)
1c: CATH_3b6yA02 (A:102-191)
1d: CATH_3b6yB02 (B:102-191)
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Organisms
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
3b6yA01
A:6-101
1b
3b6yB01
B:7-101
1c
3b6yA02
A:102-191
1d
3b6yB02
B:102-191
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (66 KB)
Header - Asym.Unit
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