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3B6V
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MOTOR DOMAIN OF HUMAN KINESIN FAMILY MEMBER 3C IN COMPLEX WITH ADP
Authors
:
H. Zhu, W. Tempel, Y. Shen, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomic Consortium (Sgc)
Date
:
29 Oct 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinesin, Structural Genomics Consortium, Motor Domain, Adp, Sgc, Atp- Binding, Microtubule, Motor Protein, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, W. Tempel, Y. Shen, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Motor Domain Of Human Kinesin Family Member 3C In Complex With Adp.
To Be Published
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
UNX
8
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:104 , ADP A:1001 , HOH A:1006 , HOH A:1007 , HOH A:1008
BINDING SITE FOR RESIDUE MG A 1002
02
AC2
SOFTWARE
THR B:104 , ADP B:1001 , HOH B:1008 , HOH B:1009 , HOH B:1010 , HOH B:1013
BINDING SITE FOR RESIDUE MG B 1002
03
AC3
SOFTWARE
ARG A:18 , GLN A:98 , THR A:99 , GLY A:100 , THR A:101 , GLY A:102 , LYS A:103 , THR A:104 , TYR A:105 , THR A:110 , MG A:1002 , HOH A:1006 , HOH A:1008 , TRP B:111
BINDING SITE FOR RESIDUE ADP A 1001
04
AC4
SOFTWARE
ASP A:65 , ALA A:66
BINDING SITE FOR RESIDUE UNX A 1003
05
AC5
SOFTWARE
GLY A:331 , GLY A:332
BINDING SITE FOR RESIDUE UNX A 1004
06
AC6
SOFTWARE
TYR A:105 , THR A:110 , TRP A:111 , LEU A:116
BINDING SITE FOR RESIDUE UNX A 1005
07
AC7
SOFTWARE
TRP A:111 , ARG B:18 , PRO B:19 , GLN B:98 , THR B:99 , GLY B:100 , THR B:101 , GLY B:102 , LYS B:103 , THR B:104 , TYR B:105 , THR B:110 , MG B:1002 , HOH B:1008 , HOH B:1013
BINDING SITE FOR RESIDUE ADP B 1001
08
AC8
SOFTWARE
TYR B:96 , GLY B:97 , ALA B:248 , SER B:250
BINDING SITE FOR RESIDUE UNX B 1003
09
AC9
SOFTWARE
ARG B:16 , GLN B:70 , THR B:106 , GLY B:118 , VAL B:119
BINDING SITE FOR RESIDUE UNX B 1004
10
BC1
SOFTWARE
ARG B:324 , LEU B:325 , GLN B:327 , ASP B:328
BINDING SITE FOR RESIDUE UNX B 1005
11
BC2
SOFTWARE
LYS B:56 , ARG B:357
BINDING SITE FOR RESIDUE UNX B 1006
12
BC3
SOFTWARE
ALA B:10 , LYS B:335 , THR B:336
BINDING SITE FOR RESIDUE UNX B 1007
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_055120 (R370R, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_055120
Q
370
R
KIF3C_HUMAN
Polymorphism
1465878
A/B
R
370
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:10-365,B:10-365)
2: KINESIN_MOTOR_1 (A:240-251,B:240-251)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KIF3C_HUMAN
10-365
2
A:10-365
B:10-365
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KIF3C_HUMAN
240-251
2
A:240-251
B:240-251
[
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Exons
(1, 2)
Info
All Exons
Exon 1.1b (A:8-381 (gaps) | B:7-372 (gaps))
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000264712
1b
ENSE00001753692
chr2:
26205366-26203242
2125
KIF3C_HUMAN
1-515
515
2
A:8-381 (gaps)
B:7-372 (gaps)
374
366
1.2a
ENST00000264712
2a
ENSE00000808974
chr2:
26179313-26179212
102
KIF3C_HUMAN
516-549
34
0
-
-
1.3
ENST00000264712
3
ENSE00000808973
chr2:
26178532-26178410
123
KIF3C_HUMAN
550-590
41
0
-
-
1.4a
ENST00000264712
4a
ENSE00000808972
chr2:
26177254-26177136
119
KIF3C_HUMAN
591-630
40
0
-
-
1.5b
ENST00000264712
5b
ENSE00000962985
chr2:
26174774-26174658
117
KIF3C_HUMAN
630-669
40
0
-
-
1.8a
ENST00000264712
8a
ENSE00001654042
chr2:
26152932-26152824
109
KIF3C_HUMAN
669-705
37
0
-
-
1.9b
ENST00000264712
9b
ENSE00001642007
chr2:
26152346-26152174
173
KIF3C_HUMAN
706-763
58
0
-
-
1.10b
ENST00000264712
10b
ENSE00001078122
chr2:
26151940-26149471
2470
KIF3C_HUMAN
763-793
31
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3b6vA00 (A:8-381)
1b: CATH_3b6vB00 (B:7-372)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
3b6vA00
A:8-381
1b
3b6vB00
B:7-372
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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