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3B6F
Biol. Unit 1
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Asym.Unit (250 KB)
Biol.Unit 1 (242 KB)
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(1)
Title
:
NUCLEOSOME CORE PARTICLE TREATED WITH CISPLATIN
Authors
:
B. Wu, C. A. Davey
Date
:
29 Oct 07 (Deposition) - 25 Dec 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.45
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Nucleosome, Chromatin, Platinum Adduct, Cisplatin, Anti- Cancer, Drug, Acetylation, Chromosomal Protein, Dna-Binding, Methylation, Nucleosome Core, Nucleus, Phosphorylation, Ubl Conjugation, Structural Protein/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Wu, P. Droge, C. A. Davey
Site Selectivity Of Platinum Anticancer Therapeutics
Nat. Chem. Biol. V. 4 110 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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All Hetero Components
1a: MANGANESE (II) ION (MNa)
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU C:64 , VAL D:45 , GLN E:76 , ASP E:77
BINDING SITE FOR RESIDUE MN E 3132
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H2A (C:21-27,G:21-27)
2: HISTONE_H3_2 (A:66-74,E:66-74)
3: HISTONE_H2B (D:89-111,H:89-111)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1_XENLA
22-28
2
C:21-27
G:21-27
2
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H32_XENLA
67-75
2
A:66-74
E:66-74
3
HISTONE_H2B
PS00357
Histone H2B signature.
H2B11_XENLA
93-115
2
D:89-111
H:89-111
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d3b6fc1 (C:15-118)
1b: SCOP_d3b6fg1 (G:15-118)
2a: SCOP_d3b6fd1 (D:22-122)
2b: SCOP_d3b6fh1 (H:24-122)
3a: SCOP_d3b6fa1 (A:33-135)
3b: SCOP_d3b6fe1 (E:33-135)
4a: SCOP_d3b6fb1 (B:24-102)
4b: SCOP_d3b6ff1 (F:24-102)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
Histone H2A
(45)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(34)
1a
d3b6fc1
C:15-118
1b
d3b6fg1
G:15-118
Protein domain
:
Histone H2B
(48)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(35)
2a
d3b6fd1
D:22-122
2b
d3b6fh1
H:24-122
Protein domain
:
Histone H3
(58)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(39)
3a
d3b6fa1
A:33-135
3b
d3b6fe1
E:33-135
Protein domain
:
Histone H4
(60)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(38)
4a
d3b6fb1
B:24-102
4b
d3b6ff1
F:24-102
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_3b6fA00 (A:33-135)
1b: CATH_3b6fH00 (H:24-122)
1c: CATH_3b6fD00 (D:22-122)
1d: CATH_3b6fF00 (F:16-102)
1e: CATH_3b6fC00 (C:15-120)
1f: CATH_3b6fG00 (G:13-121)
1g: CATH_3b6fB00 (B:24-102)
1h: CATH_3b6fE00 (E:31-135)
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Organisms
(
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(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Histone, subunit A
(62)
Homologous Superfamily
:
Histone, subunit A
(62)
African clawed frog (Xenopus laevis)
(4)
1a
3b6fA00
A:33-135
1b
3b6fH00
H:24-122
1c
3b6fD00
D:22-122
1d
3b6fF00
F:16-102
1e
3b6fC00
C:15-120
1f
3b6fG00
G:13-121
1g
3b6fB00
B:24-102
1h
3b6fE00
E:31-135
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Pfam Domains
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Asymmetric Unit 1
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