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3B5Z
Asym. Unit
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Asym.Unit (59 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MSBA FROM SALMONELLA TYPHIMURIUM WITH ADP VANADATE
Authors
:
A. Ward, C. L. Reyes, J. Yu, C. B. Roth, G. Chang
Date
:
26 Oct 07 (Deposition) - 04 Dec 07 (Release) - 05 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Abc Transporter, Msba, Lipid Flippase, Atp-Binding, Hydrolase, Inner Membrane, Lipid Transport, Membrane, Nucleotide-Binding, Transmembrane, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Ward, C. L. Reyes, J. Yu, C. B. Roth, G. Chang
Flexibility In The Abc Transporter Msba: Alternating Access With A Twist.
Proc. Natl. Acad. Sci. Usa V. 104 19005 2007
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: VANADATE ION (VO4a)
2b: VANADATE ION (VO4b)
2c: VANADATE ION (VO4c)
2d: VANADATE ION (VO4d)
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No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
VO4
4
Ligand/Ion
VANADATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:378 , GLY A:379 , GLY A:381 , VO4 A:5002 , LEU B:480 , SER B:482
BINDING SITE FOR RESIDUE ADP A 5001
2
AC2
SOFTWARE
ADP A:5001
BINDING SITE FOR RESIDUE VO4 A 5002
3
AC3
SOFTWARE
LEU A:480 , SER A:482 , SER B:378 , GLY B:379 , GLY B:381 , VO4 B:602
BINDING SITE FOR RESIDUE ADP B 601
4
AC4
SOFTWARE
ADP B:601
BINDING SITE FOR RESIDUE VO4 B 602
5
AC5
SOFTWARE
SER C:378 , GLY C:379 , GLY C:381 , VO4 C:602 , LEU D:480 , SER D:482
BINDING SITE FOR RESIDUE ADP C 601
6
AC6
SOFTWARE
ADP C:601
BINDING SITE FOR RESIDUE VO4 C 602
7
AC7
SOFTWARE
LEU C:480 , SER D:378 , GLY D:379 , SER D:380 , GLY D:381 , VO4 D:602
BINDING SITE FOR RESIDUE ADP D 601
8
AC8
SOFTWARE
ADP D:601
BINDING SITE FOR RESIDUE VO4 D 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ABC_TM1F (A:28-310,B:28-310,C:28-310,D:28-31...)
2: ABC_TRANSPORTER_1 (A:481-495,B:481-495,C:481-495,D:48...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TM1F
PS50929
ABC transporter integral membrane type-1 fused domain profile.
MSBA_SALTY
28-310
4
A:28-310
B:28-310
C:28-310
D:28-310
2
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
MSBA_SALTY
481-495
4
A:481-495
B:481-495
C:481-495
D:481-495
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3b5za1 (A:329-581)
1b: SCOP_d3b5zc1 (C:329-581)
1c: SCOP_d3b5zd1 (D:329-581)
1d: SCOP_d3b5zb1 (B:329-581)
2a: SCOP_d3b5za2 (A:10-328)
2b: SCOP_d3b5zc2 (C:10-328)
2c: SCOP_d3b5zd2 (D:10-328)
2d: SCOP_d3b5zb2 (B:10-328)
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)
Protein Domains
(
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Multidrug resistance ABC transporter MsbA, C-terminal domain
(3)
Salmonella typhimurium [TaxId: 90371]
(3)
1a
d3b5za1
A:329-581
1b
d3b5zc1
C:329-581
1c
d3b5zd1
D:329-581
1d
d3b5zb1
B:329-581
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
ABC transporter transmembrane region
(6)
Superfamily
:
ABC transporter transmembrane region
(6)
Family
:
ABC transporter transmembrane region
(6)
Protein domain
:
Multidrug resistance ABC transporter MsbA, N-terminal domain
(3)
Salmonella typhimurium [TaxId: 90371]
(3)
2a
d3b5za2
A:10-328
2b
d3b5zc2
C:10-328
2c
d3b5zd2
D:10-328
2d
d3b5zb2
B:10-328
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (59 KB)
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