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3B5N
Biol. Unit 3
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Asym.Unit (274 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (87 KB)
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(1)
Title
:
STRUCTURE OF THE YEAST PLASMA MEMBRANE SNARE COMPLEX
Authors
:
P. Strop, A. T. Brunger
Date
:
26 Oct 07 (Deposition) - 20 Nov 07 (Release) - 19 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Snare Complex, Syntaxin, Synaptobrevin, Snap-25, Sso1P, Snc1P, Sec9P, Sec9, Sso1, Snc1, Coiled Coil, Lipoprotein, Membrane, Palmitate, Transmembrane, Ubl Conjugation, Phosphorylation, Protein Transport, Transport, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Strop, S. E. Kaiser, M. Vrljic, A. T. Brunger
The Structure Of The Yeast Plasma Membrane Snare Complex Reveals Destabilizing Water-Filled Cavities.
J. Biol. Chem. V. 283 1113 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 4)
Info
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2: SYNAPTOBREVIN (I:46-65)
4: SYNTAXIN (J:196-235)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
SNC1_YEAST
28-88
0
-
2
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
SNC1_YEAST
46-65
1
-
-
I:46-65
3
T_SNARE
PS50192
t-SNARE coiled-coil homology domain profile.
SSO1_YEAST
190-252
0
-
-
SEC9_YEAST
434-496
588-650
2
-
-
K:434-496
-
-
L:589-649
4
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
SSO1_YEAST
196-235
1
-
-
J:196-235
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Exons
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SCOP Domains
(3, 8)
Info
All SCOP Domains
1a: SCOP_d3b5nc_ (C:)
1b: SCOP_d3b5ng_ (G:)
1c: SCOP_d3b5nk_ (K:)
2a: SCOP_d3b5na_ (A:)
2b: SCOP_d3b5ne_ (E:)
3a: SCOP_d3b5nb_ (B:)
3b: SCOP_d3b5nf_ (F:)
3c: SCOP_d3b5nj1 (J:191-254)
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Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
automated matches
(2)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
1a
d3b5nc_
C:
1b
d3b5ng_
G:
1c
d3b5nk_
K:
Protein domain
:
Synaptobrevin
(5)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
2a
d3b5na_
A:
2b
d3b5ne_
E:
Protein domain
:
Syntaxin 1A
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(1)
3a
d3b5nb_
B:
3b
d3b5nf_
F:
3c
d3b5nj1
J:191-254
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3b5nJ00 (J:191-254)
1b: CATH_3b5nF00 (F:189-256)
1c: CATH_3b5nB00 (B:189-257)
1d: CATH_3b5nA00 (A:26-86)
1e: CATH_3b5nE00 (E:29-86)
1f: CATH_3b5nI00 (I:29-86)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Baker's yeast (Saccharomyces cerevisiae)
(1)
1a
3b5nJ00
J:191-254
1b
3b5nF00
F:189-256
1c
3b5nB00
B:189-257
1d
3b5nA00
A:26-86
1e
3b5nE00
E:29-86
1f
3b5nI00
I:29-86
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Biol.Unit 3 (87 KB)
Header - Biol.Unit 3
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