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3B45
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLPG AT 1.9A RESOLUTION
Authors
:
Y. Wang, S. Maegawa, Y. Akiyama, Y. Ha
Date
:
23 Oct 07 (Deposition) - 22 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Intramembrane Protease, Integral Membrane Protein, Serine Protease, Dna-Binding, Glycerol Metabolism, Inner Membrane, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Wang, S. Maegawa, Y. Akiyama, Y. Ha
The Role Of L1 Loop In The Mechanism Of Rhomboid Intramembrane Protease Glpg.
J. Mol. Biol. V. 374 1104 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 17)
Info
All Hetero Components
1a: B-NONYLGLUCOSIDE (BNGa)
1b: B-NONYLGLUCOSIDE (BNGb)
1c: B-NONYLGLUCOSIDE (BNGc)
1d: B-NONYLGLUCOSIDE (BNGd)
1e: B-NONYLGLUCOSIDE (BNGe)
1f: B-NONYLGLUCOSIDE (BNGf)
1g: B-NONYLGLUCOSIDE (BNGg)
1h: B-NONYLGLUCOSIDE (BNGh)
1i: B-NONYLGLUCOSIDE (BNGi)
1j: B-NONYLGLUCOSIDE (BNGj)
1k: B-NONYLGLUCOSIDE (BNGk)
1l: B-NONYLGLUCOSIDE (BNGl)
1m: B-NONYLGLUCOSIDE (BNGm)
1n: B-NONYLGLUCOSIDE (BNGn)
1o: B-NONYLGLUCOSIDE (BNGo)
1p: B-NONYLGLUCOSIDE (BNGp)
1q: B-NONYLGLUCOSIDE (BNGq)
View:
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No.
Name
Count
Type
Full Name
1
BNG
17
Ligand/Ion
B-NONYLGLUCOSIDE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:91 , ARG A:92 , ALA A:93 , TRP A:159 , GLY A:163 , BNG A:502 , HOH A:527 , HOH A:573 , HOH A:574 , HOH A:584 , HOH A:591
BINDING SITE FOR RESIDUE BNG A 501
02
AC2
SOFTWARE
TYR A:160 , GLN A:226 , BNG A:501 , HOH A:573 , HOH A:574 , HOH A:584
BINDING SITE FOR RESIDUE BNG A 502
03
AC3
SOFTWARE
VAL A:99 , BNG A:515
BINDING SITE FOR RESIDUE BNG A 503
04
AC4
SOFTWARE
VAL A:96 , PHE A:135 , BNG A:512 , BNG A:515
BINDING SITE FOR RESIDUE BNG A 504
05
AC5
SOFTWARE
MET A:100 , PHE A:139 , BNG A:515
BINDING SITE FOR RESIDUE BNG A 505
06
AC6
SOFTWARE
PHE A:153 , PHE A:232
BINDING SITE FOR RESIDUE BNG A 506
07
AC7
SOFTWARE
ALA A:250 , GLY A:252 , ALA A:253 , ILE A:255 , BNG A:510 , HOH A:561 , HOH A:565
BINDING SITE FOR RESIDUE BNG A 507
08
AC8
SOFTWARE
VAL A:238 , TRP A:241
BINDING SITE FOR RESIDUE BNG A 508
09
AC9
SOFTWARE
TRP A:98 , ILE A:102 , MET A:208 , GLY A:209 , TRP A:212 , GLU A:216
BINDING SITE FOR RESIDUE BNG A 509
10
BC1
SOFTWARE
VAL A:267 , LEU A:270 , BNG A:507
BINDING SITE FOR RESIDUE BNG A 510
11
BC2
SOFTWARE
TRP A:122 , ASP A:128
BINDING SITE FOR RESIDUE BNG A 511
12
BC3
SOFTWARE
PHE A:133 , BNG A:504
BINDING SITE FOR RESIDUE BNG A 512
13
BC4
SOFTWARE
ALA A:110
BINDING SITE FOR RESIDUE BNG A 513
14
BC5
SOFTWARE
PHE A:135 , BNG A:503 , BNG A:504 , BNG A:505
BINDING SITE FOR RESIDUE BNG A 515
15
BC6
SOFTWARE
TRP A:241
BINDING SITE FOR RESIDUE BNG A 516
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3b45a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Rhomboid-like
(22)
Superfamily
:
Rhomboid-like
(22)
Family
:
Rhomboid-like
(22)
Protein domain
:
GlpG
(19)
Escherichia coli [TaxId: 562]
(19)
1a
d3b45a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3b45A00 (A:91-270)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Rhomboid-like fold
(7)
Homologous Superfamily
:
Rhomboid-like domains
(7)
Escherichia coli. Organism_taxid: 562.
(5)
1a
3b45A00
A:91-270
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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