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3B39
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
STRUCTURE OF THE DNAG PRIMASE CATALYTIC DOMAIN BOUND TO SSDNA
Authors
:
J. E. Corn, J. G. Pelton, J. M. Berger
Date
:
19 Oct 07 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein-Dna Complex, Toprim Fold, Dna Replication, Dna-Directed Rna Polymerase, Metal-Binding, Nucleotidyltransferase, Primosome, Transcription, Transferase, Zinc-Finger, Transferase-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. E. Corn, J. G. Pelton, J. M. Berger
Identification Of A Dna Primase Template Tracking Site Redefines The Geometry Of Primer Synthesis.
Nat. Struct. Mol. Biol. V. 15 163 2008
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
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1: TOPRIM (A:259-341,B:259-341)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TOPRIM
PS50880
Toprim domain profile.
DNAG_ECOLI
259-341
2
A:259-341
B:259-341
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d3b39a_ (A:)
1b: SCOP_d3b39b_ (B:)
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Protein Domains
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA primase core
(6)
Superfamily
:
DNA primase core
(6)
Family
:
DNA primase DnaG catalytic core
(4)
Protein domain
:
automated matches
(1)
Escherichia coli K-12 [TaxId: 83333]
(1)
1a
d3b39a_
A:
1b
d3b39b_
B:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_3b39A02 (A:241-367)
1b: CATH_3b39B02 (B:241-367)
2a: CATH_3b39A01 (A:109-240)
2b: CATH_3b39B01 (B:109-240)
3a: CATH_3b39B03 (B:368-418)
3b: CATH_3b39A03 (A:368-426)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Dna Topoisomerase Vi A Subunit; Chain: A, domain 2
(11)
Homologous Superfamily
:
[code=3.40.1360.10, no name defined]
(9)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
1a
3b39A02
A:241-367
1b
3b39B02
B:241-367
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
DNA primase DNAg catalytic core, N-terminal domain
(4)
Homologous Superfamily
:
[code=3.90.980.10, no name defined]
(4)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
2a
3b39A01
A:109-240
2b
3b39B01
B:109-240
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Pheromone ER-1
(6)
Homologous Superfamily
:
[code=1.20.50.20, no name defined]
(4)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(1)
3a
3b39B03
B:368-418
3b
3b39A03
A:368-426
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Asymmetric Unit 1
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Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
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