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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
3B2Z
Asym. Unit
Info
Asym.Unit (363 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (51 KB)
Biol.Unit 4 (51 KB)
Biol.Unit 5 (50 KB)
Biol.Unit 6 (51 KB)
Biol.Unit 7 (51 KB)
Biol.Unit 8 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADAMTS4 (APO FORM)
Authors
:
L. Mosyak, M. Stahl, W. Somers
Date
:
19 Oct 07 (Deposition) - 25 Dec 07 (Release) - 18 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Metalloprotease, Aggrecanase, Cleavage On Pair Of Basic Residues, Extracellular Matrix, Glycoprotein, Hydrolase, Metal-Binding, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Mosyak, K. Georgiadis, T. Shane, K. Svenson, T. Hebert, T. Mcdonagh S. Mackie, S. Olland, L. Lin, X. Zhong, R. Kriz, E. L. Reifenberg, L. A. Collins-Racie, C. Corcoran, B. Freeman, R. Zollner, T. Marvell, M. Vera, P. E. Sum, E. R. Lavallie, M. Stahl, W. Somers
Crystal Structures Of The Two Major Aggrecan Degrading Enzymes, Adamts4 And Adamts5.
Protein Sci. V. 17 16 2008
[
close entry info
]
Hetero Components
(2, 24)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
16
Ligand/Ion
CALCIUM ION
2
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:328 , HIS A:361 , HIS A:365 , HIS A:371
BINDING SITE FOR RESIDUE ZN A 1
02
AC2
SOFTWARE
GLU A:221 , ASP A:304 , ASP A:311 , CYS A:423 , ASP A:426 , HOH A:532
BINDING SITE FOR RESIDUE CA A 2
03
AC3
SOFTWARE
GLU A:221 , ASP A:304 , ASP A:426
BINDING SITE FOR RESIDUE CA A 3
04
AC4
SOFTWARE
ASP B:328 , HIS B:361 , HIS B:365 , HIS B:371
BINDING SITE FOR RESIDUE ZN B 1
05
AC5
SOFTWARE
CA B:3 , GLU B:221 , ASP B:311 , CYS B:423 , ASP B:426 , HOH B:510 , HOH B:515
BINDING SITE FOR RESIDUE CA B 2
06
AC6
SOFTWARE
CA B:2 , GLU B:221 , ASP B:304 , ASP B:426 , HOH B:510 , HOH B:532
BINDING SITE FOR RESIDUE CA B 3
07
AC7
SOFTWARE
ASP C:328 , HIS C:361 , HIS C:365 , HIS C:371
BINDING SITE FOR RESIDUE ZN C 1
08
AC8
SOFTWARE
GLU C:221 , ASP C:304 , ASP C:311 , CYS C:423 , ASP C:426 , HOH C:516
BINDING SITE FOR RESIDUE CA C 2
09
AC9
SOFTWARE
GLU C:221 , ASP C:304 , ASP C:426
BINDING SITE FOR RESIDUE CA C 3
10
BC1
SOFTWARE
ASP D:328 , HIS D:361 , HIS D:365 , HIS D:371
BINDING SITE FOR RESIDUE ZN D 1
11
BC2
SOFTWARE
GLU D:221 , ASP D:304 , ASP D:311 , CYS D:423 , ASP D:426 , HOH D:518
BINDING SITE FOR RESIDUE CA D 2
12
BC3
SOFTWARE
GLU D:221 , ASP D:304 , ASP D:426 , HOH D:558
BINDING SITE FOR RESIDUE CA D 3
13
BC4
SOFTWARE
ASP E:328 , HIS E:361 , HIS E:365 , HIS E:371
BINDING SITE FOR RESIDUE ZN E 1
14
BC5
SOFTWARE
GLU E:221 , ASP E:304 , ASP E:311 , CYS E:423 , ASP E:426
BINDING SITE FOR RESIDUE CA E 2
15
BC6
SOFTWARE
GLU E:221 , ASP E:304 , ASP E:426
BINDING SITE FOR RESIDUE CA E 3
16
BC7
SOFTWARE
ASP F:328 , HIS F:361 , HIS F:365 , HIS F:371
BINDING SITE FOR RESIDUE ZN F 1
17
BC8
SOFTWARE
GLU F:221 , ASP F:304 , ASP F:311 , CYS F:423 , ASP F:426
BINDING SITE FOR RESIDUE CA F 2
18
BC9
SOFTWARE
GLU F:221 , ASP F:304 , ASP F:426
BINDING SITE FOR RESIDUE CA F 3
19
CC1
SOFTWARE
ASP G:328 , HIS G:361 , HIS G:365 , HIS G:371
BINDING SITE FOR RESIDUE ZN G 1
20
CC2
SOFTWARE
GLU G:221 , ASP G:304 , ASP G:311 , CYS G:423 , ASP G:426
BINDING SITE FOR RESIDUE CA G 2
21
CC3
SOFTWARE
GLU G:221 , ASP G:304 , ASP G:426 , HOH G:521
BINDING SITE FOR RESIDUE CA G 3
22
CC4
SOFTWARE
ASP H:328 , HIS H:361 , HIS H:365 , HIS H:371
BINDING SITE FOR RESIDUE ZN H 1
23
CC5
SOFTWARE
GLU H:221 , ASP H:304 , ASP H:311 , CYS H:423 , ASP H:426 , HOH H:524
BINDING SITE FOR RESIDUE CA H 2
24
CC6
SOFTWARE
GLU H:221 , ASP H:304 , ASP H:426
BINDING SITE FOR RESIDUE CA H 3
[
close Site info
]
SAPs(SNPs)/Variants
(2, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030637 (D304N, chain A/B/C/D/E/F/G/H, )
2: VAR_030638 (M369V, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030637
D
304
N
ATS4_HUMAN
Polymorphism
17855813
A/B/C/D/E/F/G/H
D
304
N
2
UniProt
VAR_030638
M
369
V
ATS4_HUMAN
Polymorphism
17855812
A/B/C/D/E/F/G/H
M
369
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:218-428,B:218-428,C:218-428,D:21...)
2: ZINC_PROTEASE (A:358-367,B:358-367,C:358-367,D:35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS4_HUMAN
218-428
8
A:218-428
B:218-428
C:218-428
D:218-428
E:218-428
F:218-428
G:218-428
H:218-428
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS4_HUMAN
358-367
8
A:358-367
B:358-367
C:358-367
D:358-367
E:358-367
F:358-367
G:358-367
H:358-367
[
close PROSITE info
]
Exons
(4, 32)
Info
All Exons
Exon 1.2a (A:215-319 | B:216-319 (gaps) | C:2...)
Exon 1.2c (A:320-364 | B:320-364 | C:320-364 ...)
Exon 1.3b (A:364-421 | B:364-421 | C:364-421 ...)
Exon 1.4b (A:421-507 (gaps) | B:421-507 | C:4...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.2c
3: Boundary 1.2c/1.3b
4: Boundary 1.3b/1.4b
5: Boundary 1.4b/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367996
1a
ENSE00001860852
chr1:
161168846-161167785
1062
ATS4_HUMAN
1-211
211
0
-
-
1.2a
ENST00000367996
2a
ENSE00001041589
chr1:
161166670-161166347
324
ATS4_HUMAN
212-319
108
8
A:215-319
B:216-319 (gaps)
C:215-319
D:216-319 (gaps)
E:218-319 (gaps)
F:215-319
G:215-319
H:217-319 (gaps)
105
104
105
104
102
105
105
103
1.2c
ENST00000367996
2c
ENSE00001041604
chr1:
161166093-161165961
133
ATS4_HUMAN
320-364
45
8
A:320-364
B:320-364
C:320-364
D:320-364
E:320-364
F:320-364
G:320-364
H:320-364
45
45
45
45
45
45
45
45
1.3b
ENST00000367996
3b
ENSE00001288666
chr1:
161165425-161165255
171
ATS4_HUMAN
364-421
58
8
A:364-421
B:364-421
C:364-421
D:364-421
E:364-421 (gaps)
F:364-421
G:364-421
H:364-421 (gaps)
58
58
58
58
58
58
58
58
1.4b
ENST00000367996
4b
ENSE00001041601
chr1:
161164011-161163725
287
ATS4_HUMAN
421-516
96
8
A:421-507 (gaps)
B:421-507
C:421-507 (gaps)
D:421-507
E:421-509
F:421-507
G:421-507 (gaps)
H:421-508
87
87
87
87
89
87
87
88
1.5
ENST00000367996
5
ENSE00001041571
chr1:
161163616-161163430
187
ATS4_HUMAN
517-579
63
0
-
-
1.6
ENST00000367996
6
ENSE00001041575
chr1:
161163178-161163003
176
ATS4_HUMAN
579-637
59
0
-
-
1.7
ENST00000367996
7
ENSE00001041585
chr1:
161162030-161161855
176
ATS4_HUMAN
638-696
59
0
-
-
1.8
ENST00000367996
8
ENSE00001446083
chr1:
161161354-161159538
1817
ATS4_HUMAN
696-837
142
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
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Chain C
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Chain E
Chain F
Chain G
Chain H
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Asym.Unit (363 KB)
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