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3B2X
Asym. Unit
Info
Asym.Unit (347 KB)
Biol.Unit 1 (341 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI AMINOPEPTIDASE N IN COMPLEX WITH LYSINE
Authors
:
A. Addlagatta, L. Gay, B. W. Matthews
Date
:
19 Oct 07 (Deposition) - 06 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Aminopeptidase N, Protease, Hydrolase, Thermolysin, Lysin, Membrane, Metal-Binding, Metalloprotease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Addlagatta, L. Gay, B. W. Matthews
Structural Basis For The Unusual Specificity Of Escherichia Coli Aminopeptidase N.
Biochemistry V. 47 5303 2008
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close entry info
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: LYSINE (LYSa)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
LYS
1
Mod. Amino Acid
LYSINE
3
MLI
3
Ligand/Ion
MALONATE ION
4
NA
2
Ligand/Ion
SODIUM ION
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , LYS A:960
BINDING SITE FOR RESIDUE ZN A 950
02
AC2
SOFTWARE
SER A:332 , ASP A:333 , GLY A:335 , HOH A:1233 , HOH A:1364 , HOH A:1721
BINDING SITE FOR RESIDUE NA A 951
03
AC3
SOFTWARE
ASP A:452 , HOH A:1394 , HOH A:1625 , HOH A:1981 , HOH A:1982
BINDING SITE FOR RESIDUE NA A 952
04
AC4
SOFTWARE
GLU A:121 , ALA A:262 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , GLU A:320 , ASN A:373 , TYR A:376 , TYR A:381 , HOH A:1152 , HOH A:1306 , HOH A:1323
BINDING SITE FOR RESIDUE LYS A 960
05
AC5
SOFTWARE
ARG A:641 , GLU A:642 , THR A:645 , ARG A:686 , PHE A:690 , HOH A:1179 , HOH A:1299 , HOH A:1686 , HOH A:1775 , HOH A:1932 , HOH A:2044 , HOH A:2045 , HOH A:2046
BINDING SITE FOR RESIDUE MLI A 990
06
AC6
SOFTWARE
MET A:260 , GLY A:261 , TYR A:275 , ARG A:783 , ARG A:825 , HOH A:1498 , HOH A:1918
BINDING SITE FOR RESIDUE MLI A 991
07
AC7
SOFTWARE
GLU A:69 , PRO A:70 , TRP A:71 , THR A:72 , PRO A:224 , TRP A:225 , THR A:280 , TYR A:288 , HOH A:1101 , HOH A:1444
BINDING SITE FOR RESIDUE MLI A 992
08
AC8
SOFTWARE
LEU A:532 , TRP A:546 , ASP A:566 , ALA A:567 , SER A:570 , HOH A:1741
BINDING SITE FOR RESIDUE GOL A 970
09
AC9
SOFTWARE
SER A:63 , TRP A:71 , TRP A:74 , ARG A:669 , GLU A:671 , HOH A:1087 , HOH A:1732
BINDING SITE FOR RESIDUE GOL A 971
10
BC1
SOFTWARE
LEU A:61 , TRP A:74 , ARG A:669 , GLU A:671 , HOH A:1600 , HOH A:1757 , HOH A:2076 , HOH A:2083 , HOH A:2118
BINDING SITE FOR RESIDUE GOL A 972
11
BC2
SOFTWARE
ARG A:681 , GLN A:703 , ALA A:707 , ASN A:708 , ASN A:709 , ASP A:712 , HOH A:1229 , HOH A:1292 , HOH A:1908
BINDING SITE FOR RESIDUE GOL A 974
12
BC3
SOFTWARE
MET A:260 , TYR A:376 , THR A:377 , LEU A:378 , TYR A:381 , GLU A:382 , ARG A:825 , HOH A:1906 , HOH A:1918
BINDING SITE FOR RESIDUE GOL A 975
13
BC4
SOFTWARE
GLY A:261 , TYR A:275 , ARG A:293 , HIS A:297 , TYR A:381 , HOH A:1306 , HOH A:1342 , HOH A:1906
BINDING SITE FOR RESIDUE GOL A 976
14
BC5
SOFTWARE
ASP A:58 , LEU A:59 , LYS A:60 , GLU A:97 , ILE A:98 , HOH A:1507 , HOH A:1886 , HOH A:2043
BINDING SITE FOR RESIDUE GOL A 977
15
BC6
SOFTWARE
THR A:393 , ALA A:486 , CYS A:534 , GLU A:535 , SER A:537 , HOH A:1197 , HOH A:1395 , HOH A:2067
BINDING SITE FOR RESIDUE GOL A 978
16
BC7
SOFTWARE
PHE A:704 , ALA A:707 , LYS A:738 , TRP A:739 , HOH A:1258 , HOH A:1673 , HOH A:2140
BINDING SITE FOR RESIDUE GOL A 979
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:294-303)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMPN_ECOLI
294-303
1
A:294-303
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (347 KB)
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