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3B2P
Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (164 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI AMINOPEPTIDASE N IN COMPLEX WITH ARGININE
Authors
:
A. Anthony, G. Leslie, B. W. Matthews
Date
:
18 Oct 07 (Deposition) - 06 May 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protease, Hydrolase, Aminopeptidase N, Thermolysin, Membrane, Metal- Binding, Metalloprotease, ----
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Addlagatta, L. Gay, B. W. Matthews
Structural Basis For The Unusual Specificity Of Escherichia Coli Aminopeptidase N.
Biochemistry V. 47 5303 2008
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: ARGININE (ARGa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: MALONATE ION (MLIa)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ARG
1
Mod. Amino Acid
ARGININE
2
GOL
11
Ligand/Ion
GLYCEROL
3
MLI
1
Ligand/Ion
MALONATE ION
4
NA
2
Ligand/Ion
SODIUM ION
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:297 , HIS A:301 , GLU A:320 , ARG A:900
BINDING SITE FOR RESIDUE ZN A 950
02
AC2
SOFTWARE
SER A:332 , ASP A:333 , GLY A:335 , HOH A:1050 , HOH A:1132 , HOH A:1281
BINDING SITE FOR RESIDUE NA A 951
03
AC3
SOFTWARE
ASP A:452 , HOH A:1203 , HOH A:1553 , HOH A:1717
BINDING SITE FOR RESIDUE NA A 952
04
AC4
SOFTWARE
GLN A:119 , GLU A:121 , ALA A:262 , GLU A:264 , HIS A:297 , GLU A:298 , HIS A:301 , LYS A:319 , GLU A:320 , ASN A:373 , TYR A:376 , TYR A:381 , GLN A:821 , HOH A:1362 , HOH A:1377 , HOH A:1681
BINDING SITE FOR RESIDUE ARG A 900
05
AC5
SOFTWARE
ARG A:641 , GLU A:642 , THR A:645 , ARG A:686 , ALA A:722 , HOH A:1232 , HOH A:1408 , HOH A:1658
BINDING SITE FOR RESIDUE MLI A 990
06
AC6
SOFTWARE
LEU A:532 , TRP A:546 , ASP A:566 , ALA A:567 , SER A:570 , HOH A:1388
BINDING SITE FOR RESIDUE GOL A 970
07
AC7
SOFTWARE
MET A:260 , TYR A:376 , THR A:377 , LEU A:378 , TYR A:381 , GLU A:382 , HOH A:1612
BINDING SITE FOR RESIDUE GOL A 971
08
AC8
SOFTWARE
MET A:260 , GLY A:261 , LYS A:274 , TYR A:275 , ARG A:293 , ARG A:783 , ARG A:825 , HOH A:1753
BINDING SITE FOR RESIDUE GOL A 972
09
AC9
SOFTWARE
SER A:63 , TRP A:71 , TRP A:74 , ARG A:669 , GLU A:671 , HOH A:1129
BINDING SITE FOR RESIDUE GOL A 973
10
BC1
SOFTWARE
LEU A:61 , TRP A:74 , ARG A:669 , GLU A:671 , HOH A:1485
BINDING SITE FOR RESIDUE GOL A 974
11
BC2
SOFTWARE
GLU A:409 , ASP A:412 , LEU A:589 , SER A:590 , LEU A:591 , HOH A:1431 , HOH A:1449 , HOH A:1667
BINDING SITE FOR RESIDUE GOL A 975
12
BC3
SOFTWARE
GLU A:69 , PRO A:70 , TRP A:71 , THR A:72 , ALA A:73 , ASP A:221 , PRO A:224 , ALA A:278 , TYR A:288 , HOH A:1101 , HOH A:1423
BINDING SITE FOR RESIDUE GOL A 976
13
BC4
SOFTWARE
HIS A:11 , GLN A:467 , ARG A:468 , THR A:469 , GLN A:479 , PRO A:480 , ALA A:515 , HOH A:1532
BINDING SITE FOR RESIDUE GOL A 978
14
BC5
SOFTWARE
ARG A:681 , GLN A:703 , ALA A:707 , ASN A:708 , ASN A:709 , ASP A:712 , HOH A:1379 , HOH A:1404
BINDING SITE FOR RESIDUE GOL A 980
15
BC6
SOFTWARE
PRO A:473 , ASP A:474 , ALA A:476 , HOH A:1286 , HOH A:1707 , HOH A:1708
BINDING SITE FOR RESIDUE GOL A 981
16
BC7
SOFTWARE
THR A:72 , TRP A:74 , GLU A:671 , HOH A:1441
BINDING SITE FOR RESIDUE GOL A 982
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:294-303)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
AMPN_ECOLI
294-303
1
A:294-303
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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