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3B20
Asym. Unit
Info
Asym.Unit (336 KB)
Biol.Unit 1 (224 KB)
Biol.Unit 2 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH NADFROM SYNECHOCOCCUS ELONGATUS"
Authors
:
H. Matsumura, A. Kai, T. Maeda, T. Inoue
Date
:
17 Jul 11 (Deposition) - 11 Jan 12 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,O,P,Q,R
Biol. Unit 1: A,B (2x)
Biol. Unit 2: O,P,Q,R (1x)
Keywords
:
Alpha/Beta Fold, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Matsumura, A. Kai, T. Maeda, M. Tamoi, A. Satoh, H. Tamura, M. Hirose T. Ogawa, N. Kizu, A. Wadano, T. Inoue, S. Shigeoka
Structure Basis For The Regulation Of Glyceraldehyde-3-Phosphate Dehydrogenase Activity Via The Intrinsically Disordered Protein Cp12.
Structure V. 19 1846 2011
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
1e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
1f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
6
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:154 , THR A:156 , THR A:213 , GLY A:214 , ALA A:215 , HOH A:361 , HOH A:380 , HOH A:399
BINDING SITE FOR RESIDUE SO4 A 1339
02
AC2
SOFTWARE
THR A:185 , ASP A:187 , ARG A:200 , ARG A:236 , NAD A:340
BINDING SITE FOR RESIDUE SO4 A 1340
03
AC3
SOFTWARE
GLY A:9 , GLY A:11 , ARG A:12 , ILE A:13 , ASN A:35 , ASN A:36 , THR A:37 , ARG A:80 , SER A:98 , THR A:99 , GLY A:100 , THR A:122 , ALA A:123 , CYS A:155 , LEU A:186 , ASN A:318 , HOH A:352 , HOH A:404 , HOH A:417 , HOH A:422 , SO4 A:1340 , HOH B:413
BINDING SITE FOR RESIDUE NAD A 340
04
AC4
SOFTWARE
SER B:154 , THR B:213 , GLY B:214 , ALA B:215 , HOH B:347 , HOH B:377 , HOH B:442
BINDING SITE FOR RESIDUE SO4 B 2339
05
AC5
SOFTWARE
THR B:185 , ASP B:187 , ARG B:200 , ARG B:236 , NAD B:340 , HOH B:374 , HOH B:377
BINDING SITE FOR RESIDUE SO4 B 2340
06
AC6
SOFTWARE
GLY B:9 , PHE B:10 , GLY B:11 , ARG B:12 , ILE B:13 , ASN B:35 , ASN B:36 , THR B:37 , ARG B:80 , THR B:99 , GLY B:100 , THR B:122 , ALA B:123 , CYS B:155 , LEU B:186 , ASN B:318 , TYR B:322 , HOH B:374 , HOH B:378 , HOH B:412 , HOH B:418 , HOH B:419 , HOH B:436 , SO4 B:2340
BINDING SITE FOR RESIDUE NAD B 340
07
AC7
SOFTWARE
SER O:154 , THR O:156 , THR O:213 , GLY O:214 , ALA O:215 , HOH O:362 , HOH O:397 , HOH O:419
BINDING SITE FOR RESIDUE SO4 O 3339
08
AC8
SOFTWARE
THR O:185 , ASP O:187 , ARG O:200 , ARG O:236 , NAD O:340
BINDING SITE FOR RESIDUE SO4 O 3340
09
AC9
SOFTWARE
PHE O:10 , GLY O:11 , ARG O:12 , ILE O:13 , ASN O:36 , THR O:37 , ARG O:80 , SER O:98 , THR O:99 , GLY O:100 , THR O:122 , ALA O:123 , CYS O:155 , LEU O:186 , ASN O:318 , GLU O:319 , HOH O:389 , HOH O:410 , HOH O:413 , HOH O:417 , SO4 O:3340
BINDING SITE FOR RESIDUE NAD O 340
10
BC1
SOFTWARE
SER P:154 , THR P:156 , THR P:213 , GLY P:214
BINDING SITE FOR RESIDUE SO4 P 4339
11
BC2
SOFTWARE
THR P:185 , ASP P:187 , ARG P:200 , ARG P:236 , NAD P:340 , HOH P:398
BINDING SITE FOR RESIDUE SO4 P 4340
12
BC3
SOFTWARE
GLY P:9 , PHE P:10 , GLY P:11 , ARG P:12 , ILE P:13 , ASN P:35 , ASN P:36 , THR P:37 , ARG P:80 , THR P:99 , GLY P:100 , THR P:122 , ALA P:123 , CYS P:155 , THR P:185 , LEU P:186 , ASN P:318 , GLU P:319 , TYR P:322 , HOH P:371 , HOH P:382 , HOH P:388 , SO4 P:4340
BINDING SITE FOR RESIDUE NAD P 340
13
BC4
SOFTWARE
SER Q:154 , THR Q:156 , THR Q:213 , GLY Q:214 , ALA Q:215
BINDING SITE FOR RESIDUE SO4 Q 5339
14
BC5
SOFTWARE
THR Q:185 , ASP Q:187 , ARG Q:200 , ARG Q:236 , NAD Q:340
BINDING SITE FOR RESIDUE SO4 Q 5340
15
BC6
SOFTWARE
GLY Q:9 , GLY Q:11 , ARG Q:12 , ILE Q:13 , ASN Q:35 , THR Q:37 , ARG Q:80 , SER Q:98 , THR Q:99 , GLY Q:100 , THR Q:122 , ALA Q:123 , CYS Q:155 , THR Q:185 , LEU Q:186 , ASN Q:318 , GLU Q:319 , HOH Q:357 , SO4 Q:5340
BINDING SITE FOR RESIDUE NAD Q 340
16
BC7
SOFTWARE
SER R:154 , THR R:213 , ALA R:215
BINDING SITE FOR RESIDUE SO4 R 6339
17
BC8
SOFTWARE
THR R:185 , ARG R:200 , ARG R:236 , NAD R:340
BINDING SITE FOR RESIDUE SO4 R 6340
18
BC9
SOFTWARE
GLY R:9 , GLY R:11 , ARG R:12 , ILE R:13 , THR R:37 , ARG R:80 , SER R:98 , THR R:99 , GLY R:100 , THR R:122 , ALA R:123 , CYS R:155 , THR R:185 , LEU R:186 , ASN R:318 , GLU R:319 , TYR R:322 , HOH R:357 , HOH R:365 , SO4 R:6340
BINDING SITE FOR RESIDUE NAD R 340
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (336 KB)
Header - Asym.Unit
Biol.Unit 1 (224 KB)
Header - Biol.Unit 1
Biol.Unit 2 (219 KB)
Header - Biol.Unit 2
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