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3B1Q
Asym. Unit
Info
Asym.Unit (613 KB)
Biol.Unit 1 (203 KB)
Biol.Unit 2 (205 KB)
Biol.Unit 3 (209 KB)
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(1)
Title
:
STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH INOSINE
Authors
:
Y. Yasutake, H. Ota, E. Hino, S. Sakasegawa, T. Tamura
Date
:
05 Jul 11 (Deposition) - 02 Nov 11 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: C,E (1x)
Keywords
:
Rossmann Fold, Kinase, Atp Binding, Mg Binding, Nucleoside Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Yasutake, H. Ota, E. Hino, S. Sakasegawa, T. Tamura
Structures Of Burkholderia Thailandensis Nucleoside Kinase: Implications For The Catalytic Mechanism And Nucleoside Selectivity
Acta Crystallogr. , Sect. D V. 67 945 2011
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Hetero Components
(4, 43)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
2i: SODIUM ION (NAi)
2j: SODIUM ION (NAj)
2k: SODIUM ION (NAk)
2l: SODIUM ION (NAl)
2m: SODIUM ION (NAm)
2n: SODIUM ION (NAn)
2o: SODIUM ION (NAo)
3a: INOSINE (NOSa)
3b: INOSINE (NOSb)
3c: INOSINE (NOSc)
3d: INOSINE (NOSd)
3e: INOSINE (NOSe)
3f: INOSINE (NOSf)
4a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
4b: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33b)
4c: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33c)
4d: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33d)
4e: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33e)
4f: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
16
Ligand/Ion
ACETATE ION
2
NA
15
Ligand/Ion
SODIUM ION
3
NOS
6
Ligand/Ion
INOSINE
4
P33
6
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:8 , ALA A:10 , ASP A:12 , GLY A:47 , GLY A:48 , CYS A:49 , ASN A:52 , PHE A:117 , MET A:122 , PRO A:143 , GLN A:169 , ASP A:253 , HOH A:368 , HOH A:382 , HOH A:385 , SER F:36
BINDING SITE FOR RESIDUE NOS A 401
02
AC2
SOFTWARE
HIS A:286 , GLN A:287 , THR A:291 , ACT A:328 , HOH A:586 , HOH E:375 , HOH E:383
BINDING SITE FOR RESIDUE ACT A 327
03
AC3
SOFTWARE
ARG A:43 , GLU A:45 , GLN A:287 , ACT A:327 , HOH A:418 , HOH A:429 , ALA E:84 , LEU E:85 , HOH E:504
BINDING SITE FOR RESIDUE ACT A 328
04
AC4
SOFTWARE
GLN A:113 , PRO A:248 , GLY A:250 , CYS A:251 , GLY A:252 , HOH A:368 , HOH A:405 , ASN F:34
BINDING SITE FOR RESIDUE ACT A 329
05
AC5
SOFTWARE
ARG A:296 , ALA A:297 , ARG E:244
BINDING SITE FOR RESIDUE ACT A 330
06
AC6
SOFTWARE
VAL A:240 , ARG A:241 , GLU A:243 , ALA A:301 , ARG A:302 , HOH A:356 , HOH A:500 , ARG E:241 , GLU E:243 , ARG E:302 , HOH E:344 , HOH E:736
BINDING SITE FOR RESIDUE P33 A 331
07
AC7
SOFTWARE
ILE A:183 , GLU A:184 , ALA A:186 , ARG A:213 , VAL A:214 , HOH A:420
BINDING SITE FOR RESIDUE NA A 332
08
AC8
SOFTWARE
HOH A:421 , HOH A:422 , HOH A:784 , HOH A:785 , HOH A:786 , HOH F:988
BINDING SITE FOR RESIDUE NA A 333
09
AC9
SOFTWARE
GLY A:204 , HOH A:362 , HOH A:787 , HOH A:788 , HOH A:984 , ARG C:231
BINDING SITE FOR RESIDUE NA A 334
10
BC1
SOFTWARE
SER B:8 , ALA B:10 , ASP B:12 , GLY B:47 , GLY B:48 , CYS B:49 , ASN B:52 , PHE B:117 , MET B:122 , PRO B:143 , GLN B:169 , ASP B:253 , HOH B:341 , HOH B:360 , HOH B:456 , SER D:36
BINDING SITE FOR RESIDUE NOS B 401
11
BC2
SOFTWARE
HIS B:286 , GLN B:287 , THR B:291 , HOH B:589 , HOH F:380
BINDING SITE FOR RESIDUE ACT B 327
12
BC3
SOFTWARE
ARG B:44 , GLU B:45 , PHE B:46 , ASP B:74 , GLN B:102 , HOH B:672 , ARG F:44 , PHE F:46
BINDING SITE FOR RESIDUE P33 B 328
13
BC4
SOFTWARE
ARG B:241 , ALA B:242 , GLU B:243 , ARG B:302 , HOH B:371 , HOH B:497 , GLU F:243 , ARG F:302 , ACT F:327 , HOH F:614
BINDING SITE FOR RESIDUE P33 B 329
14
BC5
SOFTWARE
ILE B:183 , GLU B:184 , ALA B:186 , ARG B:213 , HOH B:601
BINDING SITE FOR RESIDUE NA B 330
15
BC6
SOFTWARE
GLY B:204 , HOH B:596 , HOH B:597 , HOH B:598 , HOH B:599 , HOH B:600
BINDING SITE FOR RESIDUE NA B 331
16
BC7
SOFTWARE
ARG B:231 , HOH B:378 , HOH B:607 , HOH B:608 , HOH B:782 , GLY C:204
BINDING SITE FOR RESIDUE NA B 332
17
BC8
SOFTWARE
SER C:8 , ALA C:10 , ASP C:12 , GLY C:47 , GLY C:48 , CYS C:49 , ASN C:52 , PHE C:117 , MET C:122 , PRO C:143 , GLN C:169 , ASP C:253 , HOH C:350 , HOH C:357 , HOH C:364 , HOH C:633 , SER E:36
BINDING SITE FOR RESIDUE NOS C 401
18
BC9
SOFTWARE
GLN C:113 , PRO C:248 , GLY C:250 , CYS C:251 , GLY C:252 , HOH C:357 , HOH C:635
BINDING SITE FOR RESIDUE ACT C 327
19
CC1
SOFTWARE
ARG C:43 , GLU C:45 , GLN C:287 , ACT C:329 , HOH C:623 , ALA D:84 , LEU D:85
BINDING SITE FOR RESIDUE ACT C 328
20
CC2
SOFTWARE
HIS C:286 , GLN C:287 , THR C:291 , ACT C:328 , HOH C:423 , HOH C:549 , HOH D:941
BINDING SITE FOR RESIDUE ACT C 329
21
CC3
SOFTWARE
VAL C:240 , ARG C:241 , GLU C:243 , LEU C:278 , ALA C:301 , ARG C:302 , HOH C:340 , HOH C:690 , ARG D:302 , HOH D:357
BINDING SITE FOR RESIDUE P33 C 330
22
CC4
SOFTWARE
TYR C:11 , ARG C:44 , HOH C:390 , HOH C:827 , TYR D:11 , ARG D:44 , PHE D:46
BINDING SITE FOR RESIDUE P33 C 331
23
CC5
SOFTWARE
ILE C:183 , GLU C:184 , ALA C:186 , ARG C:213 , HOH C:519 , HOH C:779
BINDING SITE FOR RESIDUE NA C 332
24
CC6
SOFTWARE
HOH C:454 , HOH C:464 , HOH C:631 , HOH C:632 , HOH C:633 , HOH C:634 , HOH C:1039
BINDING SITE FOR RESIDUE NA C 333
25
CC7
SOFTWARE
SER B:36 , HOH B:706 , SER D:8 , ALA D:10 , ASP D:12 , GLY D:47 , GLY D:48 , CYS D:49 , ASN D:52 , PHE D:117 , PRO D:143 , GLN D:169 , ASP D:253 , HOH D:348 , HOH D:416 , HOH D:705
BINDING SITE FOR RESIDUE NOS D 401
26
CC8
SOFTWARE
ASN B:34 , PRO D:248 , THR D:249 , GLY D:250 , CYS D:251 , GLY D:252 , HOH D:416
BINDING SITE FOR RESIDUE ACT D 327
27
CC9
SOFTWARE
ILE D:183 , GLU D:184 , ALA D:186 , ARG D:213 , HOH D:486
BINDING SITE FOR RESIDUE NA D 328
28
DC1
SOFTWARE
SER C:36 , HOH C:448 , SER E:8 , ALA E:10 , ASP E:12 , GLY E:47 , GLY E:48 , CYS E:49 , ASN E:52 , PHE E:117 , PRO E:143 , GLN E:169 , ASP E:253 , HOH E:347 , HOH E:350 , HOH E:394 , HOH E:1033
BINDING SITE FOR RESIDUE NOS E 401
29
DC2
SOFTWARE
HOH A:370 , HIS E:286 , GLN E:287 , THR E:291 , ACT E:328 , HOH E:412 , HOH E:424
BINDING SITE FOR RESIDUE ACT E 327
30
DC3
SOFTWARE
ALA A:84 , LEU A:85 , HOH A:411 , ARG E:43 , GLU E:45 , GLN E:287 , ACT E:327 , HOH E:370 , HOH E:396
BINDING SITE FOR RESIDUE ACT E 328
31
DC4
SOFTWARE
PHE E:267
BINDING SITE FOR RESIDUE ACT E 329
32
DC5
SOFTWARE
ASN C:34 , GLN E:113 , PRO E:248 , THR E:249 , GLY E:250 , CYS E:251 , GLY E:252 , HOH E:394 , HOH E:417
BINDING SITE FOR RESIDUE ACT E 330
33
DC6
SOFTWARE
THR E:16 , ARG E:43 , HOH E:471
BINDING SITE FOR RESIDUE ACT E 331
34
DC7
SOFTWARE
TYR A:11 , ARG A:44 , GLU A:45 , GLN A:102 , HOH C:404 , TYR E:11 , ARG E:44 , PHE E:46 , HOH E:612 , HOH E:613 , HOH E:615 , HOH E:616
BINDING SITE FOR RESIDUE P33 E 332
35
DC8
SOFTWARE
ILE E:183 , GLU E:184 , ALA E:186 , ARG E:213 , VAL E:214 , HOH E:416
BINDING SITE FOR RESIDUE NA E 333
36
DC9
SOFTWARE
ILE E:246 , HOH E:388 , HOH E:414 , HOH E:418 , HOH E:471 , HOH E:603 , HOH E:604
BINDING SITE FOR RESIDUE NA E 334
37
EC1
SOFTWARE
GLY E:204 , HOH E:730 , HOH E:731 , HOH E:732 , HOH E:959 , HOH E:1058
BINDING SITE FOR RESIDUE NA E 335
38
EC2
SOFTWARE
GLU E:195 , HOH E:733 , HOH E:1032 , HOH E:1033 , HOH E:1034
BINDING SITE FOR RESIDUE NA E 336
39
EC3
SOFTWARE
SER A:36 , HOH A:748 , SER F:8 , ALA F:10 , ASP F:12 , GLY F:48 , CYS F:49 , ASN F:52 , PHE F:117 , MET F:122 , PRO F:143 , GLN F:169 , ASP F:253 , HOH F:370 , HOH F:743 , HOH F:745
BINDING SITE FOR RESIDUE NOS F 401
40
EC4
SOFTWARE
P33 B:329 , ARG F:302 , ALA F:306 , HOH F:338 , HOH F:568
BINDING SITE FOR RESIDUE ACT F 327
41
EC5
SOFTWARE
ASN A:34 , PRO F:248 , GLY F:250 , CYS F:251 , GLY F:252 , HOH F:745
BINDING SITE FOR RESIDUE ACT F 328
42
EC6
SOFTWARE
ILE F:183 , GLU F:184 , ALA F:186 , ARG F:213 , HOH F:780
BINDING SITE FOR RESIDUE NA F 329
43
EC7
SOFTWARE
GLU F:195 , HOH F:972 , HOH F:1037 , HOH F:1038 , HOH F:1062
BINDING SITE FOR RESIDUE NA F 330
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3b1qa_ (A:)
1b: SCOP_d3b1qb_ (B:)
1c: SCOP_d3b1qc_ (C:)
1d: SCOP_d3b1qd_ (D:)
1e: SCOP_d3b1qe_ (E:)
1f: SCOP_d3b1qf_ (F:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribokinase-like
(226)
Superfamily
:
Ribokinase-like
(189)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Burkholderia thailandensis [TaxId: 271848]
(5)
1a
d3b1qa_
A:
1b
d3b1qb_
B:
1c
d3b1qc_
C:
1d
d3b1qd_
D:
1e
d3b1qe_
E:
1f
d3b1qf_
F:
[
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (613 KB)
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