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3B0Y
Asym. Unit
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Asym.Unit (209 KB)
Biol.Unit 1 (204 KB)
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(1)
Title
:
K263D MUTANT OF POLX FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH CA-DGTP
Authors
:
S. Nakane, N. Nakagawa, R. Masui, S. Kuramitsu, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 Jun 11 (Deposition) - 02 May 12 (Release) - 20 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Polxc, Php, Dna Polymerase, Drp Lyase, 3'-5' Exonuclease, Ap Endonuclease, Dna Repair, Nucleotide, Dna, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. Nakane, H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
The Structural Basis Of The Kinetic Mechanism Of A Gap-Filling X-Family Dna Polymerase That Binds Mg(2+)-Dntp Before Binding To Dna.
J. Mol. Biol. V. 417 179 2012
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
3a: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE (DGTa)
4a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
DGT
1
Ligand/Ion
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:157 , GLY A:187 , SER A:188 , ARG A:191 , VAL A:196 , GLY A:197 , ASP A:198 , ASP A:200 , TYR A:258 , LEU A:259 , THR A:260 , GLY A:261 , ASP A:263 , CA A:578 , CA A:579 , HOH A:597 , HOH A:638 , HOH A:689 , HOH A:805 , HOH A:809 , HOH A:876 , HOH A:888 , HOH A:907
BINDING SITE FOR RESIDUE DGT A 576
2
AC2
SOFTWARE
GLU A:413 , HIS A:440 , HIS A:468 , ARG A:506 , HOH A:615 , HOH A:894
BINDING SITE FOR RESIDUE ZN A 577
3
AC3
SOFTWARE
ASP A:198 , ASP A:200 , DGT A:576 , HOH A:638
BINDING SITE FOR RESIDUE CA A 578
4
AC4
SOFTWARE
ASP A:198 , ASP A:200 , ASP A:243 , DGT A:576 , HOH A:661 , HOH A:689
BINDING SITE FOR RESIDUE CA A 579
5
AC5
SOFTWARE
ARG A:175 , LEU A:177 , VAL A:180 , HOH A:781
BINDING SITE FOR RESIDUE CA A 580
6
AC6
SOFTWARE
MET A:56 , LEU A:58 , VAL A:61
BINDING SITE FOR RESIDUE CA A 581
7
AC7
SOFTWARE
ARG A:182 , THR A:296 , GLU A:297
BINDING SITE FOR RESIDUE CL A 582
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SAPs(SNPs)/Variants
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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