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Getting 'Exon' information from database.
3B0O
Asym. Unit
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Asym.Unit (50 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA-LACTALBUMIN
Authors
:
K. Makabe, K. Kuwajima
Date
:
10 Jun 11 (Deposition) - 13 Jun 12 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.61
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Calcium Binding Protein, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Makabe, T. Nakamura, K. Kuwajima
Structural Insights Into The Stability Perturbations Induce By N-Terminal Variation In Human And Goat Alpha-Lactalbumin
Protein Eng. Des. Sel. V. 26 165 2013
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:79 , ASP A:82 , ASP A:84 , ASP A:87 , ASP A:88 , HOH A:128
BINDING SITE FOR RESIDUE CA A 124
2
AC2
SOFTWARE
LYS B:79 , ASP B:82 , ASP B:84 , ASP B:87 , ASP B:88 , HOH B:132 , HOH B:133
BINDING SITE FOR RESIDUE CA B 124
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024526 (I27V, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024526
I
46
V
LALBA_HUMAN
Polymorphism
2232565
A/B
I
27
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:2-120,B:2-120)
2: LACTALBUMIN_LYSOZYME_1 (A:73-91,B:73-91)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LALBA_HUMAN
20-142
2
A:2-120
B:2-120
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LALBA_HUMAN
92-110
2
A:73-91
B:73-91
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:1-26 | B:1-26)
Exon 1.2 (A:26-79 | B:26-79)
Exon 1.3 (A:79-104 | B:79-104)
Exon 1.4 (A:104-120 | B:104-120)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000301046
1
ENSE00001113957
chr12:
48963829-48963671
159
LALBA_HUMAN
1-45
45
2
A:1-26
B:1-26
26
26
1.2
ENST00000301046
2
ENSE00001113961
chr12:
48963023-48962865
159
LALBA_HUMAN
45-98
54
2
A:26-79
B:26-79
54
54
1.3
ENST00000301046
3
ENSE00001113959
chr12:
48962375-48962300
76
LALBA_HUMAN
98-123
26
2
A:79-104
B:79-104
26
26
1.4
ENST00000301046
4
ENSE00001113958
chr12:
48961800-48961468
333
LALBA_HUMAN
123-142
20
2
A:104-120
B:104-120
17
17
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3b0oa_ (A:)
1b: SCOP_d3b0ob_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
automated matches
(17)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d3b0oa_
A:
1b
d3b0ob_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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