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Getting 'Biological Unit' information from database.
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3AYW
Asym. Unit
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Asym.Unit (249 KB)
Biol.Unit 1 (242 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE CONTAINING H3K56Q MUTATION
Authors
:
W. Iwasaki, H. Tachiwana, K. Kawaguchi, T. Shibata, W. Kagawa, H. Kurum
Date
:
19 May 11 (Deposition) - 21 Sep 11 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Histone-Fold, Nucleosome, Structural Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Iwasaki, H. Tachiwana, K. Kawaguchi, T. Shibata, W. Kagawa, H. Kurumizaka
Comprehensive Structural Analysis Of Mutant Nucleosomes Containing Lysine To Glutamine (Kq) Substitutions In The H3 And H4 Histone-Fold Domains
Biochemistry V. 50 7822 2011
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MN
11
Ligand/Ion
MANGANESE (II) ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:121 , LYS A:122
BINDING SITE FOR RESIDUE CL A 1001
02
AC2
SOFTWARE
VAL D:48 , ASP E:77
BINDING SITE FOR RESIDUE MN D 201
03
AC3
SOFTWARE
GLY C:46 , THR D:90 , SER D:91
BINDING SITE FOR RESIDUE CL D 202
04
AC4
SOFTWARE
PRO E:121 , LYS E:122
BINDING SITE FOR RESIDUE CL E 1001
05
AC5
SOFTWARE
GLY G:44 , ALA G:45 , GLY G:46 , THR H:90
BINDING SITE FOR RESIDUE CL G 1001
06
AC6
SOFTWARE
DG I:68 , DC J:225
BINDING SITE FOR RESIDUE MN I 1001
07
AC7
SOFTWARE
DG I:121 , DG I:122 , DC J:171
BINDING SITE FOR RESIDUE MN I 1002
08
AC8
SOFTWARE
DA I:133
BINDING SITE FOR RESIDUE MN I 1003
09
AC9
SOFTWARE
DG I:100
BINDING SITE FOR RESIDUE MN I 1004
10
BC1
SOFTWARE
DG I:78
BINDING SITE FOR RESIDUE MN I 1005
11
BC2
SOFTWARE
DG J:185 , DG J:186
BINDING SITE FOR RESIDUE MN J 1001
12
BC3
SOFTWARE
DG J:267
BINDING SITE FOR RESIDUE MN J 1002
13
BC4
SOFTWARE
DG J:217
BINDING SITE FOR RESIDUE MN J 1003
14
BC5
SOFTWARE
DG J:280
BINDING SITE FOR RESIDUE MN J 1004
15
BC6
SOFTWARE
DA I:139 , DC J:247
BINDING SITE FOR RESIDUE MN J 1005
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036206 (E63Q, chain B/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036206
E
64
Q
H4_HUMAN
Unclassified
---
B/F
E
63
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H2A (C:21-27,G:21-27)
2: HISTONE_H3_2 (A:66-74,E:66-74)
3: HISTONE_H2B (D:92-114,H:92-114)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1B_HUMAN
22-28
2
C:21-27
G:21-27
2
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H31_HUMAN
67-75
2
A:66-74
E:66-74
3
HISTONE_H2B
PS00357
Histone H2B signature.
H2B1J_HUMAN
93-115
2
D:92-114
H:92-114
[
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Exons
(2, 4)
Info
All Exons
Exon 1.2b (A:38-134 | E:37-133)
Exon 2.1 (B:25-102 | F:19-102)
View:
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/-
3: Boundary -/2.1
4: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000359303
2b
ENSE00001974165
chr6:
27858570-27858160
411
H31_HUMAN
1-136
136
2
A:38-134
E:37-133
97
97
2.1
ENST00000377803
1
ENSE00001475159
chr6:
26104104-26104518
415
H4_HUMAN
1-127
127
2
B:25-102
F:19-102
78
84
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3aywa_ (A:)
1b: SCOP_d3aywb_ (B:)
1c: SCOP_d3aywc_ (C:)
1d: SCOP_d3aywd_ (D:)
1e: SCOP_d3aywe_ (E:)
1f: SCOP_d3aywf_ (F:)
1g: SCOP_d3aywg_ (G:)
1h: SCOP_d3aywh_ (H:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
automated matches
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d3aywa_
A:
1b
d3aywb_
B:
1c
d3aywc_
C:
1d
d3aywd_
D:
1e
d3aywe_
E:
1f
d3aywf_
F:
1g
d3aywg_
G:
1h
d3aywh_
H:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT Variant
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Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (249 KB)
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