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3AV9
Asym. Unit
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Asym.Unit (67 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF NOVEL ALLOSTERIC PEPTIDE INHIBITORS OF HIV INTEGRASE IN THE LEDGF BINDING SITE
Authors
:
T. S. Peat, J. J. Deadman, J. Newman, D. I. Rhodes
Date
:
02 Mar 11 (Deposition) - 18 Jan 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,X,Y
Biol. Unit 1: A,B,X,Y (1x)
Keywords
:
Protein-Protein Interactions, Hiv, Recombination-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. I. Rhodes, T. S. Peat, N. Vandegraaff, D. Jeevarajah, J. Newman, J. Martyn, J. A. Coates, N. J. Ede, P. Rea, J. J. Deadman
Crystal Structures Of Novel Allosteric Peptide Inhibitors O Hiv Integrase Identify New Interactions At The Ledgf Bindin Site.
Chembiochem V. 12 2311 2011
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CL
2
Ligand/Ion
CHLORIDE ION
3
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:66 , HIS A:67 , LYS A:111 , LYS A:136 , LYS A:159 , HOH A:270
BINDING SITE FOR RESIDUE SO4 A 2
02
AC2
SOFTWARE
LYS A:71 , ARG A:166 , HIS A:171 , LEU A:172 , HOH A:225 , HOH A:249
BINDING SITE FOR RESIDUE SO4 A 4
03
AC3
SOFTWARE
HOH A:26 , GLY A:94 , SER A:123 , THR A:124 , THR A:125 , HOH A:261
BINDING SITE FOR RESIDUE SO4 A 6
04
AC4
SOFTWARE
GLU A:85 , ALA A:86 , GLU A:87 , PHE A:100 , LYS A:103 , SO4 B:8 , ARG B:107
BINDING SITE FOR RESIDUE SO4 A 7
05
AC5
SOFTWARE
GLU A:87 , ACY A:213 , HOH A:220 , HOH A:226 , HOH A:276 , TYR B:99 , LYS B:103
BINDING SITE FOR RESIDUE ACY A 5
06
AC6
SOFTWARE
ACY A:5 , TYR A:99 , LYS A:103 , GLU B:87 , HOH B:218 , HOH B:236
BINDING SITE FOR RESIDUE ACY A 213
07
AC7
SOFTWARE
GLU A:92
BINDING SITE FOR RESIDUE CL A 1
08
AC8
SOFTWARE
THR B:66 , HIS B:67 , LYS B:111 , LYS B:136 , LYS B:159 , HOH B:217 , HOH B:283
BINDING SITE FOR RESIDUE SO4 B 1
09
AC9
SOFTWARE
LYS B:71 , ARG B:166 , HIS B:171 , LEU B:172 , HOH B:226 , HOH B:275
BINDING SITE FOR RESIDUE SO4 B 3
10
BC1
SOFTWARE
GLY B:94 , SER B:123 , THR B:124 , THR B:125 , HOH B:245 , HOH B:259 , HOH B:260
BINDING SITE FOR RESIDUE SO4 B 5
11
BC2
SOFTWARE
SO4 A:7 , ARG A:107 , GLU B:85 , ALA B:86 , GLU B:87 , PHE B:100 , LYS B:103 , HOH B:271
BINDING SITE FOR RESIDUE SO4 B 8
12
BC3
SOFTWARE
ASN A:184 , HIS A:185 , HOH A:215 , HOH A:285 , GLY B:106 , ARG B:107 , TRP B:108 , PRO B:109
BINDING SITE FOR RESIDUE ACY B 213
13
BC4
SOFTWARE
ALA A:105 , GLY A:106 , ARG A:107 , TRP A:108 , ASN B:184 , HIS B:185
BINDING SITE FOR RESIDUE ACY B 4
14
BC5
SOFTWARE
VAL B:72 , GLU B:92
BINDING SITE FOR RESIDUE CL B 2
15
BC6
SOFTWARE
ASP A:167 , GLN A:168 , ALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , MET A:178 , HOH A:238 , HOH A:256 , GLN B:95 , THR B:124 , HOH B:254
BINDING SITE FOR CHAIN X OF LEDGF PEPTIDE
16
BC7
SOFTWARE
GLN A:95 , THR A:124 , THR A:125 , HOH A:267 , ASP B:167 , GLN B:168 , ALA B:169 , GLU B:170 , HIS B:171 , THR B:174 , MET B:178 , HOH B:233 , HOH B:246
BINDING SITE FOR CHAIN Y OF LEDGF PEPTIDE
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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