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3AV2
Asym. Unit
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Asym.Unit (246 KB)
Biol.Unit 1 (240 KB)
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(1)
Title
:
THE HUMAN NUCLEOSOME STRUCTURE CONTAINING THE HISTONE VARIANT H3.3
Authors
:
H. Tachiwana, A. Osakabe, T. Shiga, M. Miya, H. Kimura, W. Kagawa, H. Kur
Date
:
18 Feb 11 (Deposition) - 01 Jun 11 (Release) - 18 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Histone-Fold, Dna-Binding Protein, Structural Protein-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Tachiwana, A. Osakabe, T. Shiga, Y. Miya, H. Kimura, W. Kagawa, H. Kurumizaka
Structures Of Human Nucleosomes Containing Major Histone H3 Variants
Acta Crystallogr. , Sect. D V. 67 578 2011
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036206 (E63Q, chain B/F, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036206
E
64
Q
H4_HUMAN
Unclassified
---
B/F
E
63
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: HISTONE_H2A (C:21-27,G:21-27)
2: HISTONE_H3_2 (A:66-74,E:66-74)
3: HISTONE_H2B (D:92-114,H:92-114)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HISTONE_H2A
PS00046
Histone H2A signature.
H2A1B_HUMAN
22-28
2
C:21-27
G:21-27
2
HISTONE_H3_2
PS00959
Histone H3 signature 2.
H33_HUMAN
67-75
2
A:66-74
E:66-74
3
HISTONE_H2B
PS00357
Histone H2B signature.
H2B1J_HUMAN
93-115
2
D:92-114
H:92-114
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Exons
(4, 8)
Info
All Exons
Exon 1.3b (A:38-42 | E:38-42)
Exon 1.4a (A:42-93 | E:42-93)
Exon 1.5a (A:94-134 | E:94-135)
Exon 2.1 (B:25-102 | F:19-102)
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All Exon Boundaries
1: Boundary 1.2c/1.3b
2: Boundary 1.3b/1.4a
3: Boundary 1.4a/1.5a
4: Boundary 1.5a/-
5: Boundary -/2.1
6: Boundary 2.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000366816
1
ENSE00001442675
chr1:
226249552-226249795
244
H33_HUMAN
-
0
0
-
-
1.2c
ENST00000366816
2c
ENSE00001442674
chr1:
226250436-226250512
77
H33_HUMAN
-
0
0
-
-
1.3b
ENST00000366816
3b
ENSE00001428176
chr1:
226252030-226252180
151
H33_HUMAN
1-43
43
2
A:38-42
E:38-42
5
5
1.4a
ENST00000366816
4a
ENSE00001692850
chr1:
226253357-226253510
154
H33_HUMAN
43-94
52
2
A:42-93
E:42-93
52
52
1.5a
ENST00000366816
5a
ENSE00001381318
chr1:
226259052-226259224
173
H33_HUMAN
95-136
42
2
A:94-134
E:94-135
41
42
2.1
ENST00000377803
1
ENSE00001475159
chr6:
26104104-26104518
415
H4_HUMAN
1-127
127
2
B:25-102
F:19-102
78
84
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3av2a_ (A:)
1b: SCOP_d3av2e_ (E:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Histone-fold
(277)
Superfamily
:
Histone-fold
(277)
Family
:
Nucleosome core histones
(247)
Protein domain
:
Histone H3
(58)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d3av2a_
A:
1b
d3av2e_
E:
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CATH Domains
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Pfam Domains
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Asym.Unit (246 KB)
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