PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3AV0
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (126 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF MRE11-RAD50 BOUND TO ATP S
Authors
:
H. S. Lim, J. S. Kim, Y. Cho
Date
:
18 Feb 11 (Deposition) - 25 May 11 (Release) - 25 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Dna Repair, Calcineurin-Like Phosphoesterase, Abc Transporter Atpase Domain-Like, Dna Double-Strand Break Repair, Hera-Nura Complex, Nbs1 In Eukaryotes, Recombination
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. S. Lim, J. S. Kim, Y. B. Park, G. H. Gwon, Y. Cho
Crystal Structure Of The Mre11-Rad50-Atp S Complex: Understanding The Interplay Between Mre11 And Rad50
To Be Published
[
close entry info
]
Hetero Components
(5, 10)
Info
All Hetero Components
1a: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLA... (AGSa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
4a: MAGNESIUM ION (MGa)
5a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AGS
1
Ligand/Ion
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
GOL
4
Ligand/Ion
GLYCEROL
3
IPA
3
Ligand/Ion
ISOPROPYL ALCOHOL
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:30 , LYS A:59 , ARG A:62 , HOH A:701
BINDING SITE FOR RESIDUE GOL A 500
02
AC2
SOFTWARE
ASP A:108 , TYR A:126 , GLU A:135 , LYS A:139
BINDING SITE FOR RESIDUE IPA A 600
03
AC3
SOFTWARE
ARG A:211 , SO4 A:400 , GLU B:885 , ASP B:887
BINDING SITE FOR RESIDUE IPA B 601
04
AC4
SOFTWARE
GLN A:15 , TYR A:16 , TYR A:210 , ARG A:211 , IPA B:601
BINDING SITE FOR RESIDUE SO4 A 400
05
AC5
SOFTWARE
LYS B:14 , SER B:15 , ASN B:34 , GLY B:35 , SER B:36 , GLY B:37 , LYS B:38 , SER B:39 , SER B:40 , THR B:60 , ILE B:62 , THR B:63 , LYS B:64 , GLN B:134 , TYR B:890 , LEU B:910 , ASN B:914 , SER B:916 , GLY B:917 , GLY B:918 , GLU B:919 , GLU B:947 , LYS B:994 , MG B:1007 , HOH B:1400
BINDING SITE FOR RESIDUE AGS B 1006
06
AC6
SOFTWARE
SER B:39 , GLN B:134 , AGS B:1006 , HOH B:1400 , HOH B:1401
BINDING SITE FOR RESIDUE MG B 1007
07
AC7
SOFTWARE
GLY B:135 , TYR B:951
BINDING SITE FOR RESIDUE GOL B 1200
08
AC8
SOFTWARE
THR B:949 , VAL B:950 , TYR B:951 , HIS B:978 , HIS B:979
BINDING SITE FOR RESIDUE GOL B 1201
09
AC9
SOFTWARE
ASP B:59 , LYS B:64 , GLY B:65 , LYS B:66 , HOH B:1404 , HOH B:1408
BINDING SITE FOR RESIDUE GOL B 1202
10
BC1
SOFTWARE
GLN B:134 , GLY B:917 , GLN B:920 , TYR B:951
BINDING SITE FOR RESIDUE IPA B 1300
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3AV0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help