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3ATV
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN HSP70 NBD IN THE ADP-BOUND AND MG ION-FREE STATE
Authors
:
A. Arakawa, N. Handa, M. Shirouzu, S. Yokoyama
Date
:
13 Jan 11 (Deposition) - 28 Dec 11 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Atpase, Adp Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Arakawa, N. Handa, M. Shirouzu, S. Yokoyama
Biochemical And Structural Studies On The High Affinity Of Hsp70 For Adp.
Protein Sci. V. 20 1367 2011
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: CHLORIDE ION (CLa)
3a: POTASSIUM ION (Ka)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
K
1
Ligand/Ion
POTASSIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:12 , THR A:13 , THR A:14 , TYR A:15 , GLY A:201 , GLY A:202 , GLY A:230 , GLU A:268 , LYS A:271 , ARG A:272 , SER A:275 , GLY A:338 , GLY A:339 , SER A:340 , ARG A:342 , ILE A:343 , ASP A:366 , HOH A:434 , HOH A:439 , HOH A:440 , HOH A:640 , HOH A:667 , HOH A:668 , HOH A:670 , HOH A:726 , HOH A:727 , HOH A:728 , HOH A:729 , K A:1453
BINDING SITE FOR RESIDUE ADP A 1452
2
AC2
SOFTWARE
ASP A:10 , GLY A:12 , TYR A:15 , HOH A:724 , HOH A:726 , HOH A:727 , ADP A:1452
BINDING SITE FOR RESIDUE K A 1453
3
AC3
SOFTWARE
LYS A:345 , HOH A:682 , HOH A:708
BINDING SITE FOR RESIDUE CL A 1454
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032152 (I95V, chain A, )
2: VAR_029053 (E110D, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032152
I
95
V
HS71B_HUMAN
Polymorphism
---
A
I
95
V
2
UniProt
VAR_029053
E
110
D
HS71A_HUMAN
Polymorphism
562047
A
E
110
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HSP70_1 (A:9-16,A:9-16)
2: HSP70_2 (A:197-210,A:197-210)
3: HSP70_3 (A:334-348,A:334-348)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HSP70_1
PS00297
Heat shock hsp70 proteins family signature 1.
HS71B_HUMAN
9-16
1
A:9-16
HS71A_HUMAN
9-16
1
A:9-16
2
HSP70_2
PS00329
Heat shock hsp70 proteins family signature 2.
HS71B_HUMAN
197-210
1
A:197-210
HS71A_HUMAN
197-210
1
A:197-210
3
HSP70_3
PS01036
Heat shock hsp70 proteins family signature 3.
HS71B_HUMAN
334-348
1
A:334-348
HS71A_HUMAN
334-348
1
A:334-348
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Exons
(1, 1)
Info
All Exons
Exon 1.3a (A:3-382)
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000391555
3a
ENSE00001509335
HSCHR6_MHC_QBL:31785766-31788290
2525
HS71B_HUMAN
1-713
713
1
A:3-382
380
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3atva1 (A:3-188)
1b: SCOP_d3atva2 (A:189-382)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d3atva1
A:3-188
1b
d3atva2
A:189-382
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (74 KB)
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