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3AQ0
Asym. Unit
Info
Asym.Unit (863 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (218 KB)
Biol.Unit 3 (214 KB)
Biol.Unit 4 (217 KB)
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Title
:
LIGAND-BOUND FORM OF ARABIDOPSIS MEDIUM/LONG-CHAIN LENGTH PRENYL PYROPHOSPHATE SYNTHASE (SURFACE POLAR RESIDUE MUTANT)
Authors
:
F. -L. Hsieh, T. -H. Chang, T. -P. Ko, A. H. -J. Wang
Date
:
24 Oct 10 (Deposition) - 19 Jan 11 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Prenyltransferase, All Alpha-Helices Fold, Chroloplast, Transferase, Isoprenoid Biosynthetic Process
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. -L. Hsieh, T. -H. Chang, T. -P. Ko, A. H. -J. Wang
Structure And Mechanism Of An Arabidopsis Medium/Long-Chain-Length Prenyl Pyrophosphate Synthase
Plant Physiol. V. 155 1079 2011
[
close entry info
]
Hetero Components
(5, 24)
Info
All Hetero Components
1a: FARNESYL DIPHOSPHATE (FPPa)
1b: FARNESYL DIPHOSPHATE (FPPb)
1c: FARNESYL DIPHOSPHATE (FPPc)
1d: FARNESYL DIPHOSPHATE (FPPd)
1e: FARNESYL DIPHOSPHATE (FPPe)
1f: FARNESYL DIPHOSPHATE (FPPf)
2a: 3-METHYLBUT-3-ENYLSULFANYL(PHOSPHO... (ISYa)
2b: 3-METHYLBUT-3-ENYLSULFANYL(PHOSPHO... (ISYb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
5a: PYROPHOSPHATE (PPVa)
5b: PYROPHOSPHATE (PPVb)
5c: PYROPHOSPHATE (PPVc)
5d: PYROPHOSPHATE (PPVd)
5e: PYROPHOSPHATE (PPVe)
5f: PYROPHOSPHATE (PPVf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FPP
6
Ligand/Ion
FARNESYL DIPHOSPHATE
2
ISY
2
Ligand/Ion
3-METHYLBUT-3-ENYLSULFANYL(PHOSPHONOOXY)PHOSPHINIC ACID
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PPV
6
Ligand/Ion
PYROPHOSPHATE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:107 , ASP A:111 , FPP A:1002
BINDING SITE FOR RESIDUE MG A 1000
02
AC2
SOFTWARE
ASP A:107 , ASP A:111 , GLU A:169 , GLU A:172 , FPP A:1002
BINDING SITE FOR RESIDUE MG A 1001
03
AC3
SOFTWARE
ALA A:102 , SER A:103 , HIS A:106 , ASP A:107 , ASP A:111 , ARG A:116 , GLU A:169 , LYS A:193 , HOH A:439 , MG A:1000 , MG A:1001 , ASP B:136
BINDING SITE FOR RESIDUE FPP A 1002
04
AC4
SOFTWARE
GLY A:50 , LYS A:51 , PHE A:53 , ARG A:54 , HIS A:100 , ARG A:117 , THR A:194 , ILE A:198 , HOH A:638
BINDING SITE FOR RESIDUE ISY A 1003
05
AC5
SOFTWARE
GLN B:49 , GLY B:50 , LYS B:51 , ARG B:54 , HIS B:100 , HOH B:659
BINDING SITE FOR RESIDUE PPV B 1000
06
AC6
SOFTWARE
PHE B:53 , ILE B:57 , ILE B:198 , GLY B:227 , PHE B:230 , LEU B:339 , ARG B:342 , VAL B:343 , ARG B:346 , ASN B:347 , LYS B:348 , PHE F:11 , HIS F:341
BINDING SITE FOR RESIDUE FPP B 1001
07
AC7
SOFTWARE
GLU B:32 , LYS B:35 , HOH B:616 , THR E:170 , PHE F:137
BINDING SITE FOR RESIDUE PEG B 1002
08
AC8
SOFTWARE
ASP C:107 , ASP C:111 , GLU C:169 , GLU C:172 , FPP C:1002
BINDING SITE FOR RESIDUE MG C 1000
09
AC9
SOFTWARE
ASP C:107 , ASP C:108 , ASP C:111 , ARG C:116 , FPP C:1002
BINDING SITE FOR RESIDUE MG C 1001
10
BC1
SOFTWARE
ILE C:99 , SER C:103 , HIS C:106 , ASP C:107 , ASP C:111 , ARG C:116 , GLU C:169 , LYS C:193 , MG C:1000 , MG C:1001 , ASP D:136
BINDING SITE FOR RESIDUE FPP C 1002
11
BC2
SOFTWARE
LYS C:51 , ARG C:54 , HIS C:100 , ARG C:117 , HOH C:426
BINDING SITE FOR RESIDUE PPV C 1003
12
BC3
SOFTWARE
ARG D:54 , GLU D:97 , HIS D:100 , LEU D:104 , HOH D:373
BINDING SITE FOR RESIDUE PPV D 1000
13
BC4
SOFTWARE
THR C:170 , PHE D:137 , ARG D:141 , HOH D:611 , GLU G:32
BINDING SITE FOR RESIDUE PEG D 1002
14
BC5
SOFTWARE
ASP E:107 , ASP E:111 , GLU E:172 , FPP E:1002
BINDING SITE FOR RESIDUE MG E 1000
15
BC6
SOFTWARE
ASP E:107 , ASP E:111 , FPP E:1002
BINDING SITE FOR RESIDUE MG E 1001
16
BC7
SOFTWARE
SER E:103 , HIS E:106 , ASP E:107 , ASP E:111 , ARG E:116 , GLU E:169 , LYS E:193 , HOH E:559 , MG E:1000 , MG E:1001 , ASP F:136
BINDING SITE FOR RESIDUE FPP E 1002
17
BC8
SOFTWARE
LYS E:51 , ARG E:54 , HIS E:100 , ARG E:117 , HOH E:428 , HOH E:557
BINDING SITE FOR RESIDUE PPV E 1003
18
BC9
SOFTWARE
ARG F:54 , HIS F:100 , HOH F:620
BINDING SITE FOR RESIDUE PPV F 1000
19
CC1
SOFTWARE
GLN G:49 , LYS G:51 , ARG G:54 , HIS G:100
BINDING SITE FOR RESIDUE PPV G 1000
20
CC2
SOFTWARE
PHE D:11 , HIS D:341 , PHE G:53 , ILE G:57 , PHE G:230 , LEU G:339 , VAL G:343 , ARG G:346 , ASN G:347 , LYS G:348 , HOH G:367 , HOH G:368 , HOH G:674
BINDING SITE FOR RESIDUE FPP G 1001
21
CC3
SOFTWARE
ASP H:107 , ASP H:111 , GLU H:169 , FPP H:1002
BINDING SITE FOR RESIDUE MG H 1000
22
CC4
SOFTWARE
ASP H:107 , ASP H:111 , FPP H:1002
BINDING SITE FOR RESIDUE MG H 1001
23
CC5
SOFTWARE
ASP G:136 , ALA H:102 , SER H:103 , ASP H:107 , ASP H:111 , ARG H:116 , GLU H:169 , LYS H:193 , MG H:1000 , MG H:1001
BINDING SITE FOR RESIDUE FPP H 1002
24
CC6
SOFTWARE
GLY H:50 , LYS H:51 , PHE H:53 , ARG H:54 , HIS H:100 , ARG H:117 , THR H:194 , ILE H:198 , HOH H:353 , HOH H:377 , HOH H:386
BINDING SITE FOR RESIDUE ISY H 1003
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: POLYPRENYL_SYNTHASE_1 (A:104-118,B:104-112,C:104-118,D:10...)
2: POLYPRENYL_SYNTHASE_2 (A:226-238,B:226-238,C:226-238,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLYPRENYL_SYNTHASE_1
PS00723
Polyprenyl synthases signature 1.
SPS3_ARATH
178-192
8
A:104-118
B:104-112
C:104-118
D:104-113
E:104-118
F:104-113
G:104-110
H:104-118
2
POLYPRENYL_SYNTHASE_2
PS00444
Polyprenyl synthases signature 2.
SPS3_ARATH
300-312
8
A:226-238
B:226-238
C:226-238
D:226-238
E:226-238
F:226-238
G:226-238
H:226-238
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Asym.Unit (863 KB)
Header - Asym.Unit
Biol.Unit 1 (218 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (214 KB)
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