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3APS
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (41 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRX4 DOMAIN OF ERDJ5
Authors
:
K. Inaba, M. Suzuki, K. Nagata
Date
:
20 Oct 10 (Deposition) - 20 Apr 11 (Release) - 20 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Thioredoxin Fold, Cxxc Motif, Endoplasmic Reticulum, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hagiwara, K. Maegawa, M. Suzuki, R. Ushioda, K. Araki, Y. Matsumoto J. Hoseki, K. Nagata, K. Inaba
Structural Basis Of An Erad Pathway Mediated By The Er-Resident Protein Disulfide Reductase Erdj5.
Mol. Cell V. 41 432 2011
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
SO4
1
Ligand/Ion
SULFATE ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:677 , TYR A:731 , PRO A:732 , GLN A:733 , THR A:734
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
ALA A:742 , TYR A:743
BINDING SITE FOR RESIDUE GOL A 790
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_1 (-|A:692-710,B:692-710)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_1
PS00194
Thioredoxin family active site.
DJC10_MOUSE
472-490
692-710
2
-
A:692-710
B:692-710
[
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Exons
(3, 6)
Info
All Exons
Exon 1.19a (A:669-715 | B:669-715)
Exon 1.20 (A:716-755 | B:716-755)
Exon 1.21a (A:756-782 | B:756-782)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18/1.19a
2: Boundary 1.19a/1.20
3: Boundary 1.20/1.21a
4: Boundary 1.21a/1.22
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000028392
1
ENSMUSE00000477397
chr2:
80155623-80155962
340
DJC10_MOUSE
-
0
0
-
-
1.2
ENSMUST00000028392
2
ENSMUSE00000889499
chr2:
80157406-80157756
351
DJC10_MOUSE
1-68
68
0
-
-
1.3
ENSMUST00000028392
3
ENSMUSE00000165366
chr2:
80159317-80159479
163
DJC10_MOUSE
69-123
55
0
-
-
1.4
ENSMUST00000028392
4
ENSMUSE00000165373
chr2:
80161401-80161451
51
DJC10_MOUSE
123-140
18
0
-
-
1.5a
ENSMUST00000028392
5a
ENSMUSE00000403421
chr2:
80164817-80164899
83
DJC10_MOUSE
140-167
28
0
-
-
1.6
ENSMUST00000028392
6
ENSMUSE00000165376
chr2:
80165152-80165283
132
DJC10_MOUSE
168-211
44
0
-
-
1.7
ENSMUST00000028392
7
ENSMUSE00000165375
chr2:
80165775-80165868
94
DJC10_MOUSE
212-243
32
0
-
-
1.8
ENSMUST00000028392
8
ENSMUSE00000165370
chr2:
80166815-80166892
78
DJC10_MOUSE
243-269
27
0
-
-
1.9
ENSMUST00000028392
9
ENSMUSE00000240006
chr2:
80168229-80168272
44
DJC10_MOUSE
269-283
15
0
-
-
1.10a
ENSMUST00000028392
10a
ENSMUSE00000239999
chr2:
80171426-80171563
138
DJC10_MOUSE
284-329
46
0
-
-
1.11a
ENSMUST00000028392
11a
ENSMUSE00000165371
chr2:
80173086-80173175
90
DJC10_MOUSE
330-359
30
0
-
-
1.11d
ENSMUST00000028392
11d
ENSMUSE00000165379
chr2:
80173883-80173996
114
DJC10_MOUSE
360-397
38
0
-
-
1.12
ENSMUST00000028392
12
ENSMUSE00000165377
chr2:
80175610-80175724
115
DJC10_MOUSE
398-436
39
0
-
-
1.13
ENSMUST00000028392
13
ENSMUSE00000165369
chr2:
80180630-80180757
128
DJC10_MOUSE
436-478
43
0
-
-
1.14b
ENSMUST00000028392
14b
ENSMUSE00000239958
chr2:
80180969-80181085
117
DJC10_MOUSE
479-517
39
0
-
-
1.15
ENSMUST00000028392
15
ENSMUSE00000239949
chr2:
80184074-80184175
102
DJC10_MOUSE
518-551
34
0
-
-
1.16
ENSMUST00000028392
16
ENSMUSE00000428676
chr2:
80185081-80185236
156
DJC10_MOUSE
552-603
52
0
-
-
1.17
ENSMUST00000028392
17
ENSMUSE00000239906
chr2:
80186669-80186802
134
DJC10_MOUSE
604-648
45
0
-
-
1.18
ENSMUST00000028392
18
ENSMUSE00000239898
chr2:
80187501-80187554
54
DJC10_MOUSE
648-666
19
0
-
-
1.19a
ENSMUST00000028392
19a
ENSMUSE00000239888
chr2:
80187805-80187952
148
DJC10_MOUSE
666-715
50
2
A:669-715
B:669-715
47
47
1.20
ENSMUST00000028392
20
ENSMUSE00000239880
chr2:
80189426-80189545
120
DJC10_MOUSE
716-755
40
2
A:716-755
B:716-755
40
40
1.21a
ENSMUST00000028392
21a
ENSMUSE00000413886
chr2:
80190786-80190890
105
DJC10_MOUSE
756-790
35
2
A:756-782
B:756-782
27
27
1.22
ENSMUST00000028392
22
ENSMUSE00000688937
chr2:
80193016-80194200
1185
DJC10_MOUSE
791-793
3
0
-
-
[
close EXON info
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3apsa_ (A:)
1b: SCOP_d3apsb_ (B:)
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Classes
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(
)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Mouse (Mus musculus) [TaxId: 10090]
(11)
1a
d3apsa_
A:
1b
d3apsb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Nucleic
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (84 KB)
Header - Asym.Unit
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