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3APC
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (137 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PI3K-GAMMA IN COMPLEX WITH CH5132799
Authors
:
M. Nakamura, T. A. Fukami, T. Miyazaki, M. Yoshida
Date
:
14 Oct 10 (Deposition) - 13 Apr 11 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphoinositide 3-Kinase Gamma, Kinase, Transferase, Transferase- Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ohwada, H. Ebiike, H. Kawada, M. Tsukazaki, M. Nakamura, T. Miyazaki, K. Morikami, K. Yoshinari, M. Yoshida, O. Kondoh, S. Kuramoto, K. Ogawa, Y. Aoki, N. Shimma
Discovery And Biological Activity Of A Novel Class I Pi3K Inhibitor, Ch5132799
Bioorg. Med. Chem. Lett. V. 21 1767 2011
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 5-(7-METHANESULFONYL-2-MORPHOLIN-4... (MMDa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MMD
1
Ligand/Ion
5-(7-METHANESULFONYL-2-MORPHOLIN-4-YL-6,7-DIHYDRO-5H-PYRROLO[2,3-D]PYRIMIDIN-4-YL)-PYRIMIDIN-2-YLAMINE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:804 , ILE A:831 , LYS A:833 , ASP A:836 , LEU A:838 , ASP A:841 , ILE A:879 , GLU A:880 , ILE A:881 , VAL A:882 , THR A:887 , MET A:953 , ASP A:964
BINDING SITE FOR RESIDUE MMD A 1
2
AC2
SOFTWARE
PRO A:206 , LEU A:207 , TRP A:212 , LYS A:288
BINDING SITE FOR RESIDUE SO4 A 1103
3
AC3
SOFTWARE
ASP A:946 , ARG A:947 , HIS A:948 , ASN A:951 , ILE A:968 , TRP A:1086
BINDING SITE FOR RESIDUE SO4 A 2
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(6, 6)
Info
All PROSITE Patterns/Profiles
1: PI3K_RBD (A:217-309)
2: PI3K_C2 (A:357-521)
3: PIK_HELICAL (A:546-723)
4: PI3_4_KINASE_3 (A:828-1073)
5: PI3_4_KINASE_1 (A:832-846)
6: PI3_4_KINASE_2 (A:931-951)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PI3K_RBD
PS51546
Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile.
PK3CG_HUMAN
217-309
1
A:217-309
2
PI3K_C2
PS51547
Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile.
PK3CG_HUMAN
357-521
1
A:357-521
3
PIK_HELICAL
PS51545
PIK helical domain profile.
PK3CG_HUMAN
541-723
1
A:546-723
4
PI3_4_KINASE_3
PS50290
Phosphatidylinositol 3- and 4-kinases family profile.
PK3CG_HUMAN
828-1073
1
A:828-1073
5
PI3_4_KINASE_1
PS00915
Phosphatidylinositol 3- and 4-kinases signature 1.
PK3CG_HUMAN
832-846
1
A:832-846
6
PI3_4_KINASE_2
PS00916
Phosphatidylinositol 3- and 4-kinases signature 2.
PK3CG_HUMAN
931-951
1
A:931-951
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.3 (A:144-665 (gaps))
Exon 1.4 (A:666-687)
Exon 1.5 (A:688-763 (gaps))
Exon 1.6 (A:763-797)
Exon 1.7 (A:798-846)
Exon 1.8a (A:847-877)
Exon 1.10b (A:877-920)
Exon 1.11 (A:921-958)
Exon 1.12 (A:958-1010 (gaps))
Exon 1.13c (A:1011-1093)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8a
07: Boundary 1.8a/1.10b
08: Boundary 1.10b/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13c
11: Boundary 1.13c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000359195
2
ENSE00001516038
chr7:
106505924-106506221
298
PK3CG_HUMAN
-
0
0
-
-
1.3
ENST00000359195
3
ENSE00000881746
chr7:
106507995-106510001
2007
PK3CG_HUMAN
1-665
665
1
A:144-665 (gaps)
522
1.4
ENST00000359195
4
ENSE00001209548
chr7:
106512982-106513047
66
PK3CG_HUMAN
666-687
22
1
A:666-687
22
1.5
ENST00000359195
5
ENSE00001209547
chr7:
106513158-106513383
226
PK3CG_HUMAN
688-763
76
1
A:688-763 (gaps)
76
1.6
ENST00000359195
6
ENSE00001209556
chr7:
106515145-106515248
104
PK3CG_HUMAN
763-797
35
1
A:763-797
35
1.7
ENST00000359195
7
ENSE00001274495
chr7:
106519964-106520110
147
PK3CG_HUMAN
798-846
49
1
A:798-846
49
1.8a
ENST00000359195
8a
ENSE00001274489
chr7:
106522562-106522652
91
PK3CG_HUMAN
847-877
31
1
A:847-877
31
1.10b
ENST00000359195
10b
ENSE00000715047
chr7:
106523478-106523608
131
PK3CG_HUMAN
877-920
44
1
A:877-920
44
1.11
ENST00000359195
11
ENSE00000715048
chr7:
106524600-106524711
112
PK3CG_HUMAN
921-958
38
1
A:921-958
38
1.12
ENST00000359195
12
ENSE00000715049
chr7:
106526580-106526737
158
PK3CG_HUMAN
958-1010
53
1
A:958-1010 (gaps)
53
1.13c
ENST00000359195
13c
ENSE00001838951
chr7:
106545554-106547590
2037
PK3CG_HUMAN
1011-1102
92
1
A:1011-1093
83
[
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]
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d3apca3 (A:546-725)
2a: SCOP_d3apca2 (A:357-521)
3a: SCOP_d3apca1 (A:144-321)
4a: SCOP_d3apca4 (A:726-1093)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Phoshoinositide 3-kinase (PI3K) helical domain
(56)
Protein domain
:
Phoshoinositide 3-kinase (PI3K) helical domain
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
1a
d3apca3
A:546-725
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
Phoshoinositide 3-kinase (PI3K)
(55)
Human (Homo sapiens) [TaxId: 9606]
(50)
2a
d3apca2
A:357-521
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ras-binding domain, RBD
(83)
Protein domain
:
Phoshoinositide 3-kinase (PI3K)
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
3a
d3apca1
A:144-321
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Phoshoinositide 3-kinase (PI3K), catalytic domain
(56)
Protein domain
:
Phoshoinositide 3-kinase (PI3K), catalytic domain
(56)
Human (Homo sapiens) [TaxId: 9606]
(51)
4a
d3apca4
A:726-1093
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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