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Getting 'Exon' information from database.
3APB
Asym. Unit
Info
Asym.Unit (58 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GALECTIN-8 N-TERMINAL CARBOHYDRATE RECOGNITION DOMAIN IN COMPLEX WITH IODIDE
Authors
:
T. Matsuzaka, H. Ideo, K. Yamashita, T. Nonaka
Date
:
14 Oct 10 (Deposition) - 26 Jan 11 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta-Sandwich, Galectin, Carbohydrate/Sugar Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ideo, T. Matsuzaka, T. Nonaka, A. Seko, K. Yamashita
Galectin-8-N-Domain Recognition Mechanism For Sialylated An Sulfated Glycans
To Be Published
[
close entry info
]
Hetero Components
(1, 29)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
29
Ligand/Ion
IODIDE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:72 , ARG B:99
BINDING SITE FOR RESIDUE IOD A 155
02
AC2
SOFTWARE
GLN A:47
BINDING SITE FOR RESIDUE IOD A 156
03
AC3
SOFTWARE
ARG A:45
BINDING SITE FOR RESIDUE IOD A 158
04
AC4
SOFTWARE
HIS A:38 , ASN A:145 , IOD B:166
BINDING SITE FOR RESIDUE IOD A 159
05
AC5
SOFTWARE
PRO A:18 , GLY A:142
BINDING SITE FOR RESIDUE IOD A 160
06
AC6
SOFTWARE
ASP A:112
BINDING SITE FOR RESIDUE IOD A 161
07
AC7
SOFTWARE
ARG A:99 , HOH A:212
BINDING SITE FOR RESIDUE IOD A 163
08
AC8
SOFTWARE
TYR A:93 , ASP A:94
BINDING SITE FOR RESIDUE IOD A 164
09
AC9
SOFTWARE
ASN A:10
BINDING SITE FOR RESIDUE IOD A 165
10
BC1
SOFTWARE
GLY A:131 , HOH A:229
BINDING SITE FOR RESIDUE IOD A 166
11
BC2
SOFTWARE
PHE A:19 , THR A:22
BINDING SITE FOR RESIDUE IOD A 167
12
BC3
SOFTWARE
ARG A:72
BINDING SITE FOR RESIDUE IOD B 155
13
BC4
SOFTWARE
SER A:148
BINDING SITE FOR RESIDUE IOD B 156
14
BC5
SOFTWARE
ARG B:45 , GLN B:47
BINDING SITE FOR RESIDUE IOD B 157
15
BC6
SOFTWARE
HIS B:38
BINDING SITE FOR RESIDUE IOD B 159
16
BC7
SOFTWARE
THR B:22
BINDING SITE FOR RESIDUE IOD B 160
17
BC8
SOFTWARE
ARG B:99 , HOH B:202
BINDING SITE FOR RESIDUE IOD B 161
18
BC9
SOFTWARE
ASP B:112
BINDING SITE FOR RESIDUE IOD B 162
19
CC1
SOFTWARE
GLY B:142
BINDING SITE FOR RESIDUE IOD B 164
20
CC2
SOFTWARE
HOH A:254
BINDING SITE FOR RESIDUE IOD B 165
21
CC3
SOFTWARE
IOD A:159
BINDING SITE FOR RESIDUE IOD B 166
22
CC4
SOFTWARE
GLY B:131 , LYS B:134
BINDING SITE FOR RESIDUE IOD B 167
23
CC5
SOFTWARE
LYS B:111
BINDING SITE FOR RESIDUE IOD B 169
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012990 (F19Y, chain A/B, )
2: VAR_009710 (R36C, chain A/B, )
3: VAR_012991 (V56V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012990
F
19
Y
LEG8_HUMAN
Polymorphism
2737713
A/B
F
19
Y
2
UniProt
VAR_009710
R
36
C
LEG8_HUMAN
Polymorphism
1041935
A/B
R
36
C
3
UniProt
VAR_012991
M
56
V
LEG8_HUMAN
Polymorphism
1041937
A/B
V
56
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:19-152,B:19-152|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
LEG8_HUMAN
19-152
187-317
2
A:19-152
B:19-152
-
[
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Exons
(4, 8)
Info
All Exons
Exon 1.6a (A:3-15 | B:3-15)
Exon 1.7b (A:16-45 | B:16-45)
Exon 1.8b (A:45-115 | B:45-115)
Exon 1.9b (A:116-154 | B:116-154)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3c/1.6a
2: Boundary 1.6a/1.7b
3: Boundary 1.7b/1.8b
4: Boundary 1.8b/1.9b
5: Boundary 1.9b/1.10e
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3c
ENST00000366584
3c
ENSE00001381502
chr1:
236686899-236687361
463
LEG8_HUMAN
-
0
0
-
-
1.6a
ENST00000366584
6a
ENSE00002193374
chr1:
236689268-236689415
148
LEG8_HUMAN
1-15
15
2
A:3-15
B:3-15
13
13
1.7b
ENST00000366584
7b
ENSE00002141991
chr1:
236700797-236700885
89
LEG8_HUMAN
16-45
30
2
A:16-45
B:16-45
30
30
1.8b
ENST00000366584
8b
ENSE00000793501
chr1:
236702179-236702389
211
LEG8_HUMAN
45-115
71
2
A:45-115
B:45-115
71
71
1.9b
ENST00000366584
9b
ENSE00000805377
chr1:
236703864-236703983
120
LEG8_HUMAN
116-155
40
2
A:116-154
B:116-154
39
39
1.10e
ENST00000366584
10e
ENSE00000793503
chr1:
236704954-236705010
57
LEG8_HUMAN
156-174
19
0
-
-
1.11c
ENST00000366584
11c
ENSE00001226656
chr1:
236706061-236706087
27
LEG8_HUMAN
175-183
9
0
-
-
1.11r
ENST00000366584
11r
ENSE00002191373
chr1:
236706860-236706948
89
LEG8_HUMAN
184-213
30
0
-
-
1.12c
ENST00000366584
12c
ENSE00000805385
chr1:
236708050-236708215
166
LEG8_HUMAN
213-268
56
0
-
-
1.14j
ENST00000366584
14j
ENSE00001911385
chr1:
236711312-236714310
2999
LEG8_HUMAN
269-317
49
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3apba_ (A:)
1b: SCOP_d3apbb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3apba_
A:
1b
d3apbb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
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Protein
Nucleic
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Hetero
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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